View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_11 (Length: 338)
Name: NF16665_low_11
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 42121047 - 42121144
Alignment:
| Q |
28 |
ctaaaagtgtctccacaatcaagatacactctatgcagaattgcagcatactttttcaaactagaaaccctctaccaagtgtctgtatctcaaccaaa |
125 |
Q |
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| T |
42121047 |
ctaaaagtgtctccaccaacaagatacactctatgcagagttgcagcatactttttcaaactagataccctctaccaagttcctgtatctcaaccaaa |
42121144 |
T |
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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 42121172 - 42121237
Alignment:
| Q |
122 |
caaaacattctagagtatacaataaatcttagata-tctatctggtcactaccaatacaattatca |
186 |
Q |
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| T |
42121172 |
caaaacattctagagtatacaataaatcttagatagattagttggtcaccaccaatacaattatca |
42121237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 338
Target Start/End: Complemental strand, 1920031 - 1919900
Alignment:
| Q |
207 |
gtagacatctacaaggtactcatcagatgtaccagaaaatgtcatcttaagatattccaaatctatatcatgcttttcatggatgaactgattatctatg |
306 |
Q |
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| T |
1920031 |
gtagacatctacaagtgactcatcagatataccaggaaatgtcatcctaagatattccaaatcaatatcaagctcttcatccatatactgattctctgtc |
1919932 |
T |
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| Q |
307 |
agctgtgccacactcttcagtgatgaaaagta |
338 |
Q |
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| T |
1919931 |
agctgtgccacactctgtggcgatgaaaagta |
1919900 |
T |
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