View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_14 (Length: 263)
Name: NF16665_low_14
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_14 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 26563925 - 26563669
Alignment:
| Q |
8 |
ataatacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaac |
107 |
Q |
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| T |
26563925 |
ataatacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaac |
26563826 |
T |
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| Q |
108 |
tgcagtctgaaaaaccgcaataatgtgaggtaaacaaaatattctacgaaaacaaccaaagaaaagtttttacattttgtaaatgtagaagattgatctc |
207 |
Q |
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| T |
26563825 |
tgcagtctgaaaaaccgaaataatgtgaggtaaacaaaatattctacgaaaacaaccacagaaaagtttttacattttgtaaatgtagaagattgatctc |
26563726 |
T |
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| Q |
208 |
ttccttaacatactc-tttacgaagttatctatttataaggctacaaaattgacttt |
263 |
Q |
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| T |
26563725 |
ttccttaacatactcttttacgaagttatatacttataaggctacaaaattgacttt |
26563669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 26558433 - 26558322
Alignment:
| Q |
12 |
tacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgca |
111 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
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| T |
26558433 |
tacttcggtagcagcttcaagatttttgtccacaattaaagacttcctaatgatttctacgtcgcgtcctgcagggtcaggcatccaaagcaggactgca |
26558334 |
T |
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| Q |
112 |
gtctgaaaaacc |
123 |
Q |
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| T |
26558333 |
gtctgcaaaacc |
26558322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 26551787 - 26551682
Alignment:
| Q |
12 |
tacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgca |
111 |
Q |
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||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||| | ||||||||||||| |||||| ||||||||| |
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| T |
26551787 |
tacttcggtggcagcttcaaggtttctgtccacaactagcgacttcctaatgatttctgcatcacgtgcggcagggtcaggcaaccaaagtagaactgca |
26551688 |
T |
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| Q |
112 |
gtctga |
117 |
Q |
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|||||| |
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| T |
26551687 |
gtctga |
26551682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 50935895 - 50936005
Alignment:
| Q |
12 |
tacttcggtagcagcttcaaggtttttgtccacaattagagacttcctaatgatttctgcgtcacgtcctgcagggtcaggcatccaaagcagaactgca |
111 |
Q |
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||||||||||||||||||||||||| | ||||||| ||| |||||||| |||||||| | |||||||||||| |||||||||||||||| ||||| ||| |
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| T |
50935895 |
tacttcggtagcagcttcaaggtttctatccacaactagtgacttcctgatgatttccacatcacgtcctgcatggtcaggcatccaaagtagaacagca |
50935994 |
T |
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| Q |
112 |
gtctgaaaaac |
122 |
Q |
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| T |
50935995 |
gtctgaaaaac |
50936005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 50936189 - 50936254
Alignment:
| Q |
198 |
gattgatctcttccttaacatactctttacgaagttatctatttataaggctacaaaattgacttt |
263 |
Q |
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||||||||||||| |||||| || |||||| |||||||||| ||||| | ||||| |||||||||| |
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| T |
50936189 |
gattgatctcttctttaacacacactttacaaagttatctacttatatgactacagaattgacttt |
50936254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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