View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16665_low_17 (Length: 252)

Name: NF16665_low_17
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16665_low_17
NF16665_low_17
[»] chr2 (33 HSPs)
chr2 (14-83)||(27317461-27317530)
chr2 (14-83)||(30331833-30331902)
chr2 (21-83)||(31744387-31744449)
chr2 (17-83)||(3312162-3312228)
chr2 (25-81)||(9174908-9174964)
chr2 (35-83)||(18179052-18179100)
chr2 (21-83)||(4607014-4607076)
chr2 (17-83)||(44119867-44119933)
chr2 (14-83)||(26202110-26202179)
chr2 (27-83)||(15305769-15305825)
chr2 (14-70)||(15757590-15757646)
chr2 (14-86)||(20952437-20952509)
chr2 (21-81)||(42419882-42419942)
chr2 (14-81)||(44590106-44590173)
chr2 (36-86)||(2416417-2416467)
chr2 (29-83)||(7928217-7928271)
chr2 (14-84)||(39073620-39073690)
chr2 (21-83)||(39659428-39659490)
chr2 (16-93)||(39983428-39983506)
chr2 (21-71)||(42659142-42659192)
chr2 (14-83)||(2142736-2142805)
chr2 (45-86)||(2964725-2964766)
chr2 (53-86)||(6772449-6772482)
chr2 (27-83)||(15370242-15370299)
chr2 (35-71)||(26548555-26548592)
chr2 (44-81)||(28803451-28803488)
chr2 (14-70)||(1625982-1626038)
chr2 (35-83)||(10619139-10619187)
chr2 (54-86)||(20933848-20933880)
chr2 (44-84)||(22878210-22878250)
chr2 (35-71)||(29628673-29628709)
chr2 (15-67)||(41851618-41851670)
chr2 (26-86)||(44600617-44600677)
[»] chr8 (19 HSPs)
chr8 (16-83)||(38602411-38602478)
chr8 (14-86)||(10758173-10758245)
chr8 (21-72)||(35534543-35534594)
chr8 (21-83)||(30251373-30251435)
chr8 (21-81)||(12496993-12497053)
chr8 (14-81)||(43717855-43717922)
chr8 (21-71)||(1058008-1058058)
chr8 (14-72)||(35749500-35749558)
chr8 (21-83)||(36963273-36963335)
chr8 (35-83)||(9130238-9130286)
chr8 (14-70)||(26771347-26771403)
chr8 (35-86)||(1096593-1096644)
chr8 (19-86)||(29818860-29818927)
chr8 (28-82)||(40859703-40859757)
chr8 (37-83)||(42893409-42893455)
chr8 (22-71)||(38648441-38648490)
chr8 (11-71)||(6525896-6525956)
chr8 (16-60)||(13821986-13822030)
chr8 (35-83)||(32213222-32213270)
[»] chr7 (16 HSPs)
chr7 (17-84)||(33266404-33266471)
chr7 (14-83)||(19302482-19302551)
chr7 (17-81)||(9210906-9210970)
chr7 (14-83)||(4970711-4970780)
chr7 (14-70)||(18765366-18765422)
chr7 (14-71)||(27863656-27863713)
chr7 (14-83)||(31744884-31744953)
chr7 (35-83)||(44822061-44822109)
chr7 (14-83)||(18962502-18962571)
chr7 (14-63)||(19022524-19022573)
chr7 (14-83)||(20526528-20526597)
chr7 (45-86)||(44917442-44917483)
chr7 (14-71)||(48470126-48470183)
chr7 (43-83)||(24048651-24048691)
chr7 (35-83)||(34036020-34036068)
chr7 (35-79)||(47796037-47796081)
[»] chr4 (22 HSPs)
chr4 (14-82)||(15173223-15173291)
chr4 (15-83)||(39691068-39691136)
chr4 (14-83)||(49940086-49940155)
chr4 (27-83)||(27043749-27043805)
chr4 (35-83)||(17822784-17822832)
chr4 (44-86)||(3639084-3639126)
chr4 (21-83)||(18815112-18815174)
chr4 (14-72)||(29657466-29657524)
chr4 (37-83)||(42403942-42403988)
chr4 (21-83)||(54426132-54426194)
chr4 (14-67)||(1706704-1706757)
chr4 (14-83)||(21731575-21731644)
chr4 (35-83)||(41336863-41336911)
chr4 (27-83)||(44797975-44798031)
chr4 (16-83)||(8705025-8705092)
chr4 (14-81)||(49003963-49004030)
chr4 (21-83)||(24169352-24169414)
chr4 (35-81)||(52315118-52315164)
chr4 (14-83)||(55414332-55414401)
chr4 (14-83)||(55437158-55437227)
chr4 (27-83)||(13126495-13126551)
chr4 (14-70)||(40174639-40174695)
[»] chr1 (25 HSPs)
chr1 (16-82)||(24334279-24334345)
chr1 (14-72)||(33204324-33204382)
chr1 (14-83)||(50644174-50644243)
chr1 (14-82)||(39976130-39976198)
chr1 (14-85)||(37617382-37617453)
chr1 (14-71)||(2295178-2295235)
chr1 (14-81)||(1432597-1432664)
chr1 (16-71)||(29904835-29904890)
chr1 (14-72)||(6557054-6557112)
chr1 (16-82)||(42575389-42575455)
chr1 (14-83)||(3233934-3234003)
chr1 (14-71)||(38001677-38001734)
chr1 (55-86)||(4276566-4276597)
chr1 (44-83)||(6292604-6292643)
chr1 (35-70)||(7028405-7028440)
chr1 (21-83)||(2295280-2295342)
chr1 (35-77)||(38116002-38116044)
chr1 (45-86)||(7217990-7218031)
chr1 (14-71)||(13810080-13810137)
chr1 (27-72)||(15784412-15784457)
chr1 (35-88)||(27146169-27146222)
chr1 (14-83)||(36872810-36872879)
chr1 (42-83)||(41505784-41505825)
chr1 (45-81)||(30257797-30257833)
chr1 (35-67)||(39658444-39658476)
[»] chr5 (24 HSPs)
chr5 (38-83)||(39594913-39594958)
chr5 (15-86)||(11700245-11700316)
chr5 (14-80)||(11064748-11064814)
chr5 (14-71)||(15015925-15015982)
chr5 (21-86)||(34736443-34736508)
chr5 (14-71)||(35445775-35445832)
chr5 (16-72)||(12425657-12425713)
chr5 (24-83)||(3932595-3932654)
chr5 (21-82)||(9107179-9107240)
chr5 (14-83)||(10640035-10640104)
chr5 (14-83)||(15246915-15246984)
chr5 (14-83)||(32010027-32010096)
chr5 (14-83)||(32942676-32942745)
chr5 (35-83)||(41419422-41419470)
chr5 (35-83)||(41534541-41534589)
chr5 (35-81)||(7674750-7674796)
chr5 (14-83)||(7705917-7705986)
chr5 (14-83)||(16937802-16937871)
chr5 (35-80)||(22209746-22209791)
chr5 (14-83)||(34102232-34102301)
chr5 (27-72)||(40426860-40426905)
chr5 (28-85)||(42582605-42582662)
chr5 (54-86)||(9174938-9174970)
chr5 (39-83)||(35299872-35299916)
[»] chr3 (24 HSPs)
chr3 (27-83)||(25447164-25447220)
chr3 (14-82)||(584128-584196)
chr3 (14-70)||(18405763-18405819)
chr3 (14-82)||(24085258-24085326)
chr3 (36-83)||(16072960-16073007)
chr3 (14-83)||(22203512-22203580)
chr3 (14-71)||(31365119-31365176)
chr3 (14-83)||(39980811-39980880)
chr3 (27-83)||(20170633-20170689)
chr3 (35-83)||(24684741-24684789)
chr3 (18-82)||(51929277-51929341)
chr3 (14-81)||(21367749-21367816)
chr3 (21-67)||(3845498-3845544)
chr3 (21-71)||(5448533-5448583)
chr3 (46-84)||(26990143-26990181)
chr3 (38-72)||(34610736-34610770)
chr3 (44-89)||(21872208-21872253)
chr3 (15-71)||(22667485-22667542)
chr3 (15-71)||(22724124-22724181)
chr3 (40-81)||(26911699-26911740)
chr3 (39-80)||(33405114-33405155)
chr3 (14-83)||(34235012-34235081)
chr3 (53-85)||(46407863-46407895)
chr3 (35-83)||(46478770-46478818)
[»] chr6 (16 HSPs)
chr6 (35-83)||(21405073-21405121)
chr6 (16-86)||(6536698-6536766)
chr6 (37-83)||(34404645-34404691)
chr6 (40-91)||(4163261-4163312)
chr6 (40-91)||(4224882-4224933)
chr6 (14-84)||(33089587-33089658)
chr6 (14-84)||(10645303-10645373)
chr6 (37-83)||(18612411-18612457)
chr6 (29-71)||(35069543-35069585)
chr6 (17-83)||(35099121-35099187)
chr6 (21-70)||(2455077-2455126)
chr6 (27-83)||(848084-848139)
chr6 (14-70)||(2455341-2455397)
chr6 (44-88)||(2455922-2455966)
chr6 (43-83)||(32916947-32916986)
chr6 (46-86)||(33027706-33027746)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 27317461 - 27317530
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  27317461 tcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaaca 27317530  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 30331833 - 30331902
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  30331833 tcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 31744387 - 31744449
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  31744387 ttctctcaaacagtctcagaaaacttatgtcggtagataagcccaaataagccaatccaaaca 31744449  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 3312162 - 3312228
Alignment:
Q  17 taaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||| | ||||| ||||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  3312162 taaattctccccaacagtctcacaaaacttacgtcagtagataagctcaaataagccaatccaaaca 3312228  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 9174908 - 9174964
Alignment:
Q  25 ctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||||||| |||||| |||||||| |  ||||||||||||||||||||||||||||    
T  9174908 ctcaaacagtctcacataacttatgccaatagataagctcaaataagtaaatccaaa 9174964  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 18179052 - 18179100
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  18179052 ctcacaaaacttatgttagtagataagctcaaataagtcaatccaaaca 18179100  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 4607014 - 4607076
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||| |||| || |||||||||||||| | ||||||||||||||||||||  ||||||||||    
T  4607014 ttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaaca 4607076  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 44119867 - 44119933
Alignment:
Q  17 taaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||||||||  |||||||||||||||| | |  ||||||||||||||  ||||||||||    
T  44119867 taaattctctcaaacagtttcacaaaacttatgtcagcatgtaagctcaaataagccaatccaaaca 44119933  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 26202110 - 26202179
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||  |||| |  ||||||||||||||||| | ||||||| |||||||||| ||||||||||    
T  26202110 tcataaattctagcaaagaatctcacaaaacttatgtcagcagataagttcaaataagttaatccaaaca 26202179  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 15305769 - 15305825
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||  ||||||||||||||||  ||||||||||||||||||  ||||||||||    
T  15305769 caaacagtttcacaaaacttatgtcaatagataagctcaaataagccaatccaaaca 15305825  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 15757646 - 15757590
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||||||||| ||| ||| ||||||||||||||| | ||| ||||||||||||||    
T  15757646 tcataaattctcccaagcagtctcacaaaacttatgccagtaaataagctcaaataa 15757590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 20952437 - 20952509
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||| |||||| ||| || || ||||||||| || | ||| |||||||||||||||| |||||||||||||    
T  20952437 tcataagttctcttaaatagtctaacaaaacttttgccagtatataagctcaaataagtcaatccaaacatgc 20952509  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 42419882 - 42419942
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||| ||||||| |||| |||||||||||| | |||||| ||||||||||| ||||||||    
T  42419882 ttctcccaaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 44590106 - 44590173
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||| |||| |||||| | |||||||||||||||||  ||||||| ||||||||||  ||||||||    
T  44590106 tcataagttctttcaaacggtctcacaaaacttatgtctatagataaactcaaataagccaatccaaa 44590173  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 2416417 - 2416467
Alignment:
Q  36 tcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||||||||||  |||||||| ||||||||||| |||| ||||||||    
T  2416417 tcacaaaacttatgttagtagataaactcaaataagtcaatctaaacatgc 2416467  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 7928271 - 7928217
Alignment:
Q  29 aacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||  ||||||||||    
T  7928271 aacagtctcacacaacttatgtcaatagataagctcaaataagccaatccaaaca 7928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 39073690 - 39073620
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacat 84  Q
    |||||| ||||  ||||||| ||||||||| |||||||||||||| | ||||||||| | |||| ||||||    
T  39073690 tcataagttcttccaaacagtctcacaaaaattatgtcggtagatgaactcaaataaatcaatctaaacat 39073620  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 39659490 - 39659428
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||| |||| ||||| ||||||||||| ||||||||||||||  |||  ||||||||||    
T  39659490 ttctctcagacagcctcacgaaacttatgtcagtagataagctcaagcaagccaatccaaaca 39659428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 39983428 - 39983506
Alignment:
Q  16 ataaattctctcaaacagactcacaaa-acttatgtcggtagataagctcaaataagtaaatccaaacatgcttatagt 93  Q
    |||| ||||||||| ||| |||||||  | ||||| |||||||||| |||||||||| ||||||||||| ||| |||||    
T  39983428 ataagttctctcaatcagtctcacaaggatttatgccggtagataacctcaaataagcaaatccaaacaggctcatagt 39983506  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 42659192 - 42659142
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    ||||| ||||||| ||||||||||||||| | ||| |||||||||||||||    
T  42659192 ttctcccaaacagtctcacaaaacttatgccagtaaataagctcaaataag 42659142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 2142736 - 2142805
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||| |||| ||||||||||   |||||||| ||||||||||| || |||||||    
T  2142736 tcataagttctcccaaacagtctcataaaacttatgcatgtagataaactcaaataagtcaaaccaaaca 2142805  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 2964766 - 2964725
Alignment:
Q  45 ttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||| ||||||||||| |||||||||| |||||||||||||    
T  2964766 ttatgccggtagataagttcaaataagttaatccaaacatgc 2964725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 6772482 - 6772449
Alignment:
Q  53 gtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||||||||||||||| |||||||||||||    
T  6772482 gtagataagctcaaataagtcaatccaaacatgc 6772449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 15370299 - 15370242
Alignment:
Q  27 caaacagactcacaaaa-cttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||||||  |||||| | |||||||||||||||||||| ||||||||||    
T  15370299 caaacagtctcacaaatgcttatgccagtagataagctcaaataagtcaatccaaaca 15370242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 26548555 - 26548592
Alignment:
Q  35 ctcacaaa-acttatgtcggtagataagctcaaataag 71  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26548555 ctcacaaatacttatgtcggtagataagctcaaataag 26548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 28803488 - 28803451
Alignment:
Q  44 cttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  28803488 cttatgccggtagataagctcaaataagtcaatccaaa 28803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 1625982 - 1626038
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||| |||||||||| || || |||||||||||||| |  |||||||||||||||    
T  1625982 tcataagttctctcaaatagtcttacaaaacttatgtcaggggataagctcaaataa 1626038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 10619187 - 10619139
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||| |||| |||||||| ||||||| ||| ||||||||||    
T  10619187 ctcacaaaacttgtgtcagtagataaactcaaatgagtcaatccaaaca 10619139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 20933848 - 20933880
Alignment:
Q  54 tagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||||||||||||| ||||||||||||||    
T  20933848 tagataagctcaaataagaaaatccaaacatgc 20933880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 22878210 - 22878250
Alignment:
Q  44 cttatgtcggtagataagctcaaataagtaaatccaaacat 84  Q
    |||||||| || ||||||||||||||||| |||||||||||    
T  22878210 cttatgtcagtggataagctcaaataagtcaatccaaacat 22878250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 29628709 - 29628673
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataag 71  Q
    ||||||||||||||| | |||||||||||||||||||    
T  29628709 ctcacaaaacttatgacagtagataagctcaaataag 29628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 41851618 - 41851670
Alignment:
Q  15 cataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaa 67  Q
    ||||||||||| ||| ||| |||||||||||| ||||  ||||||||||||||    
T  41851618 cataaattctcccaatcagtctcacaaaacttttgtcaatagataagctcaaa 41851670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 44600617 - 44600677
Alignment:
Q  26 tcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||| ||||||||||||||||  ||  |||| ||||||||||  |||||||||||||    
T  44600617 tcaaacagcctcacaaaacttatgtgagtgcataaactcaaataagccaatccaaacatgc 44600677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 38602411 - 38602478
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||| ||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  38602411 ataagttctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 38602478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 10758245 - 10758173
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||||||||| |||||||| ||||||||||||||||  | ||||||| |||||||||| ||| |||||||||    
T  10758245 tcataaattctatcaaacagtctcacaaaacttatgttagcagataagttcaaataagtcaattcaaacatgc 10758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 35534594 - 35534543
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  35534594 ttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataagt 35534543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 30251435 - 30251373
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||| ||||||| ||||| ||||||||||| |||||||||||||||||||  ||||||||||    
T  30251435 ttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaaca 30251373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 12497053 - 12496993
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||||||||||| ||||||||||||||| | | |||||||||||||||| | ||||||||    
T  12497053 ttctctcaaacagtctcacaaaacttatgccaggagataagctcaaataaatcaatccaaa 12496993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 43717922 - 43717855
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||| ||||| |||| || |||||||||||||||||  ||||||||||||||||||  ||||||||    
T  43717922 tcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaaataagccaatccaaa 43717855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 1058058 - 1058008
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    ||||| ||||||| ||||||||||||||||  |||||||||||||||||||    
T  1058058 ttctcccaaacagtctcacaaaacttatgtaagtagataagctcaaataag 1058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 35749558 - 35749500
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    |||||| ||||||||||||| ||| |||||||||||||  ||||||||||||| |||||    
T  35749558 tcataagttctctcaaacagcctcgcaaaacttatgtcaatagataagctcaattaagt 35749500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 36963335 - 36963273
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||| ||||||| ||||||||||||||| | |||||| ||||||||||||  ||||||||||    
T  36963335 ttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaaca 36963273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 9130286 - 9130238
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||| | |||||||||||||||||||  ||||||||||    
T  9130286 ctcacaaaacttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 26771347 - 26771403
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||| ||||| ||||||| ||||||||||||||| | ||||||||||||| ||||    
T  26771347 tcataagttctcccaaacagtctcacaaaacttatgcccgtagataagctcagataa 26771403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 1096593 - 1096644
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||||||||||||  || |||| ||||||||||| |||||||||||||    
T  1096593 ctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaacatgc 1096644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 29818927 - 29818860
Alignment:
Q  19 aattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||  |||||| |||||||||||||||   ||||||||||||||||| |  |||||||||||||    
T  29818927 aattctccgaaacagtctcacaaaacttatgatagtagataagctcaaatatgccaatccaaacatgc 29818860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 40859757 - 40859703
Alignment:
Q  28 aaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    |||||| ||||||||||||||||  | |||||||||||||||||  |||||||||    
T  40859757 aaacagcctcacaaaacttatgttagcagataagctcaaataagccaatccaaac 40859703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 42893455 - 42893409
Alignment:
Q  37 cacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||| |||||||||| ||||||||||| ||||||||||    
T  42893455 cacaaaaattatgccggtagataaactcaaataagttaatccaaaca 42893409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 38648441 - 38648490
Alignment:
Q  22 tctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||| ||||||| ||||||||||||||||| |||||||| || |||||||    
T  38648441 tctcccaaacagtctcacaaaacttatgtcagtagataatcttaaataag 38648490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 6525896 - 6525956
Alignment:
Q  11 tcatcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    ||||||||| || || ||||||| | ||||||||||||||  |||||||| ||||||||||    
T  6525896 tcatcataagttttcccaaacagtcacacaaaacttatgttagtagataaactcaaataag 6525956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 13822030 - 13821986
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataa 60  Q
    ||||||| |||||||||| |||||||||||||||||  |||||||    
T  13822030 ataaattttctcaaacagtctcacaaaacttatgtcactagataa 13821986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 32213222 - 32213270
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||||| || ||| |||||||||||||||  ||||||||||    
T  32213222 ctcacaaaacttatatcagtatataagctcaaataagacaatccaaaca 32213270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 33266471 - 33266404
Alignment:
Q  17 taaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacat 84  Q
    ||||||||| |||| ||  ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33266471 taaattctcccaaatagtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacat 33266404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 19302551 - 19302482
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||| |||| |  ||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  19302551 tcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaaca 19302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 9210906 - 9210970
Alignment:
Q  17 taaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||||||| ||||||| |||| ||||||||| || |||||||||||||||||||| ||||||||    
T  9210906 taaattctcccaaacagtctcagaaaacttatatcagtagataagctcaaataagtcaatccaaa 9210970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 4970780 - 4970711
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||| ||||||| |||||||||   |||||||||||||||||| ||||||||||    
T  4970780 tcataagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaaca 4970711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 18765366 - 18765422
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||| ||||| ||||||| |||||||||||||||||  |||||||||||||||||    
T  18765366 tcataagttctcccaaacagtctcacaaaacttatgtcaatagataagctcaaataa 18765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 27863713 - 27863656
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| |||||||||| || ||||||||||||||| | || ||||||||||||||||    
T  27863713 tcataagttctctcaaatagtctcacaaaacttatgccagtggataagctcaaataag 27863656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 31744884 - 31744953
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||| |||||||  |||| |||| ||| ||||||||||||  |||||||||| ||||||||||    
T  31744884 tcataaattctttcaaacaatctcataaaatttacgtcggtagataaattcaaataagttaatccaaaca 31744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 44822061 - 44822109
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||| | |||||| ||||||||||| ||||||||||    
T  44822061 ctcacaaaacttatgtcagcagataaactcaaataagtcaatccaaaca 44822109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 18962571 - 18962502
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| |||||  |||||| || |||||||||||||| ||||||||| || ||||| | ||||||||||    
T  18962571 tcataagttctccaaaacagtctaacaaaacttatgtcagtagataagatcgaataactcaatccaaaca 18962502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 19022573 - 19022524
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagct 63  Q
    |||||||||||| ||||||  ||||||||||| ||||| |||||||||||    
T  19022573 tcataaattctcccaaacaatctcacaaaactcatgtcagtagataagct 19022524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 20526528 - 20526597
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||||||||||| ||||||||| || |  |  ||||||| ||||||||||| ||||||||||    
T  20526528 tcataagttctctcaaacagtctcacaaaatttctaccaatagataaactcaaataagtcaatccaaaca 20526597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 44917483 - 44917442
Alignment:
Q  45 ttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||||||| |||||| ||||||||||| |||||||||||||    
T  44917483 ttatgtcgggagataaactcaaataagtcaatccaaacatgc 44917442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 48470126 - 48470183
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| ||||| ||||||  |||| ||||||||||||  ||||||||||||||||||    
T  48470126 tcataagttctcccaaacaatctcataaaacttatgtctatagataagctcaaataag 48470183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 24048651 - 24048691
Alignment:
Q  43 acttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||| |||||||| ||||||||||||||| ||||||    
T  24048651 acttatgtcagtagataaactcaaataagtaaattcaaaca 24048691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 34036020 - 34036068
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| || |||||| |||||||||||||||||||| ||| ||||||    
T  34036020 ctcacaatacatatgtcagtagataagctcaaataagtcaattcaaaca 34036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 47796037 - 47796081
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatcca 79  Q
    ||||||||| |||||||  || |||||||||||||||||||||||    
T  47796037 ctcacaaaatttatgtcattacataagctcaaataagtaaatcca 47796081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 15173291 - 15173223
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    ||||||| |||| ||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  15173291 tcataaagtctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 39691136 - 39691068
Alignment:
Q  15 cataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||||| |||||||||||||||   |||||||||||||||||||| ||| ||||||    
T  39691136 cataaattctctcaaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaaca 39691068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 49940155 - 49940086
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||||||||||| ||||||||||||||||  | || ||||||||||||||| ||||||||||    
T  49940155 tcataagttctctcaaacagtctcacaaaacttatgttagcaggtaagctcaaataagtcaatccaaaca 49940086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 27043805 - 27043749
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||  |||||||||||||||| |||||||||||||||||||| ||||||||||    
T  27043805 caaacagtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaaca 27043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 17822832 - 17822784
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  17822832 ctcacagaacttatgtcagtagataagctcaaataagttaatccaaaca 17822784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 3639126 - 3639084
Alignment:
Q  44 cttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  3639126 cttatgtcggtagataagctcaaataagcaaatccaaatatgc 3639084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 18815112 - 18815174
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||| |||||||||||||||   |||| ||||||||||||||  ||||||||||    
T  18815112 ttctctcaaacagtctcacaaaacttatgctagtaggtaagctcaaataagccaatccaaaca 18815174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 29657466 - 29657524
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    |||||| ||||||||| ||  |||||||||||| ||| |||||||||||||||||||||    
T  29657466 tcataagttctctcaagcaatctcacaaaacttgtgttggtagataagctcaaataagt 29657524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 42403988 - 42403942
Alignment:
Q  37 cacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||    
T  42403988 cacaaaacttatgtcagttgataagctcaaataagtcaatccaaaca 42403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 54426132 - 54426194
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||| ||| ||| ||||||||||||||| | |||||||||||||||||||  ||||||||||    
T  54426132 ttctcccaagcagtctcacaaaacttatgccagtagataagctcaaataagccaatccaaaca 54426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 1706704 - 1706757
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaa 67  Q
    |||||| ||||||||||| | ||||||||||||||||| |||||||| ||||||    
T  1706704 tcataatttctctcaaaccgtctcacaaaacttatgtcagtagataaactcaaa 1706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 21731644 - 21731575
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||  ||||||||||||||||| ||||||| ||||||||||   ||||||||||    
T  21731644 tcataagttctcccaaacaatctcacaaaacttatgtcagtagatatgctcaaataaaccaatccaaaca 21731575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 41336863 - 41336911
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||||||    
T  41336863 ctcacaaaacttatgtgagtagataaactcaaataagtcaatccaaaca 41336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 44797975 - 44798031
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||||||||||||||| ||||||||||| |||| ||  ||||||||||    
T  44797975 caaacagtctcacaaaacttatgtcagtagataagcttaaatcagccaatccaaaca 44798031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 8705025 - 8705092
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||| ||||| ||| ||| |||||||||||||||||  ||||||||||||||| ||  ||||||||||    
T  8705025 ataagttctcccaatcagtctcacaaaacttatgtcaatagataagctcaaatgagccaatccaaaca 8705092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 49004030 - 49003963
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||| |||||||||| || ||||||||||||| |   ||||||||||||||||||| || ||||||    
T  49004030 tcataagttctctcaaatagtctcacaaaacttaagctagtagataagctcaaataagcaattccaaa 49003963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 24169352 - 24169414
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||| || ||||||||||||||| | |||||||| ||| ||||||  ||||||||||    
T  24169352 ttctctcaaatagtctcacaaaacttatgccagtagataaactctaataagccaatccaaaca 24169414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 52315164 - 52315118
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||||||||||| ||| |||||||| ||||||||||| ||||||||    
T  52315164 ctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaa 52315118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 55414401 - 55414332
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||  ||||||  |||||||| ||||| | |||||||  ||||||||||| ||||||||||    
T  55414401 tcataaattctcctaaacagcatcacaaaaattatgccagtagatactctcaaataagtcaatccaaaca 55414332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 55437158 - 55437227
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| |||| |||||||   |||||||||||||| | |||||||| ||||||||||  ||||||||||    
T  55437158 tcataagttctttcaaacaatttcacaaaacttatggcagtagataaactcaaataagccaatccaaaca 55437227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 13126551 - 13126495
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||||||||||||||  |||| |||||| |||||||  ||||||||||    
T  13126551 caaacagtctcacaaaacttatgttagtaggtaagctaaaataagccaatccaaaca 13126495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 40174639 - 40174695
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||| || || ||||||| ||||||||||||||||  |||||||| |||||||||    
T  40174639 tcataagttatcccaaacagtctcacaaaacttatgttagtagataaactcaaataa 40174695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 24334279 - 24334345
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    ||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||| |||||||||    
T  24334279 ataaattctctcaaatagtctcacaaaacttatgtccgttgataaactcaaataagtcaatccaaac 24334345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 33204382 - 33204324
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    |||||| ||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  33204382 tcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctcaaataagt 33204324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 50644243 - 50644174
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||| |||||||||| |||||  |||||||||||||||||||| ||||||||||    
T  50644243 tcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 39976198 - 39976130
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    |||||| |||||||||||||  |||||||||||||||| |||||||| ||||||||||| | |||||||    
T  39976198 tcataagttctctcaaacagtttcacaaaacttatgtcagtagataatctcaaataagtcagtccaaac 39976130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 37617453 - 37617382
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatg 85  Q
    |||||||||||| ||||||| ||||||||||||| | |  ||||||| ||||||||||| ||||||||||||    
T  37617453 tcataaattctcgcaaacagtctcacaaaacttacggcaatagataaactcaaataagtcaatccaaacatg 37617382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 2295178 - 2295235
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| ||||| ||||||| ||||||||||||||| | |||||||||||||||||||    
T  2295178 tcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataag 2295235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 1432597 - 1432664
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||| ||||  ||||||| ||||||||| |||||||||| ||||||||||||||||  ||||||||    
T  1432597 tcataagttcttccaaacagtctcacaaaatttatgtcggtggataagctcaaataagccaatccaaa 1432664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 29904835 - 29904890
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||| ||||||||||||| |||||||||||||||   |||||||||||||||||||    
T  29904835 ataagttctctcaaacagtctcacaaaacttatgcaagtagataagctcaaataag 29904890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 6557054 - 6557112
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    |||||| |||||||||| || ||||||||||||||||  ||||||||| ||||||||||    
T  6557054 tcataagttctctcaaatagtctcacaaaacttatgttagtagataagttcaaataagt 6557112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 42575455 - 42575389
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    ||||||| |||||||||| ||||||||| |||||   |||||||||||||||||||  |||||||||    
T  42575455 ataaattttctcaaacagcctcacaaaatttatgctagtagataagctcaaataaggcaatccaaac 42575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 3234003 - 3233934
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| | ||||| ||||||||||||| | |  ||||||||||||||||||| ||||||||||    
T  3234003 tcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaaca 3233934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 38001677 - 38001734
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| ||||| ||||||| ||||||||||||||||| || ||||| ||||||||||    
T  38001677 tcataagttctcccaaacagtctcacaaaacttatgtcagttgataaactcaaataag 38001734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 4276597 - 4276566
Alignment:
Q  55 agataagctcaaataagtaaatccaaacatgc 86  Q
    ||||||||||||||||||||||||||||||||    
T  4276597 agataagctcaaataagtaaatccaaacatgc 4276566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 6292604 - 6292643
Alignment:
Q  44 cttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  6292604 cttatgtcagtagataagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 7028405 - 7028440
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataa 70  Q
    ||||||||||||||||||| ||||||||||||||||    
T  7028405 ctcacaaaacttatgtcggcagataagctcaaataa 7028440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 2295280 - 2295342
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||| |||| || |||| |||||||| ||| |||||||||||||||||||  ||||||||||    
T  2295280 ttctcccaaatagtctcagaaaacttaagtcagtagataagctcaaataagccaatccaaaca 2295342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 38116044 - 38116002
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatc 77  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||    
T  38116044 ctcacaaaacttacgtcagtagataagctcaaataagtcaatc 38116002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 7218031 - 7217990
Alignment:
Q  45 ttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||| ||||||||||||| |||||||| |||||||||||||    
T  7218031 ttatgccggtagataagcttaaataagtcaatccaaacatgc 7217990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 13810080 - 13810137
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| |||||| ||| || ||||||||||||| ||| |||||||||| ||||||||    
T  13810080 tcataagttctctaaaagagtctcacaaaacttacgtcagtagataagcacaaataag 13810137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 15784412 - 15784457
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    ||||||| || |||||||||||||  ||||||||||||||||||||    
T  15784412 caaacagtcttacaaaacttatgttagtagataagctcaaataagt 15784457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 27146222 - 27146169
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgctt 88  Q
    ||||||||||||||| |  ||||||||||||||| ||| |||||||||| ||||    
T  27146222 ctcacaaaacttatgccaatagataagctcaaatcagtcaatccaaacaagctt 27146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 36872810 - 36872879
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||  |||||| ||| |||||||||||| | ||| |||||| |||||||  ||||||||||    
T  36872810 tcataaattctccaaaacagtctcgcaaaacttatgttgttagttaagcttaaataagccaatccaaaca 36872879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 41505784 - 41505825
Alignment:
Q  42 aacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||| |||||||||||||||||||  ||||||||||    
T  41505784 aacttatgtcagtagataagctcaaataagccaatccaaaca 41505825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 30257797 - 30257833
Alignment:
Q  45 ttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  30257797 ttatgtcagtagataaactcaaataagtaaatccaaa 30257833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 39658476 - 39658444
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaa 67  Q
    |||||||||||||||||||| ||||||||||||    
T  39658476 ctcacaaaacttatgtcggtggataagctcaaa 39658444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 39594913 - 39594958
Alignment:
Q  38 acaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  39594913 acaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 11700245 - 11700316
Alignment:
Q  15 cataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||| |||| | |||||| ||||||||||||||| | || |||||||||||||||| ||||||||||||||    
T  11700245 cataagttctgtgaaacagtctcacaaaacttatgccagtggataagctcaaataagcaaatccaaacatgc 11700316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 11064748 - 11064814
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaa 80  Q
    |||||| ||||||||||||  |||||||||||||||| ||||||||| ||||||||| | |||||||    
T  11064748 tcataagttctctcaaacaatctcacaaaacttatgttggtagataaactcaaataaatcaatccaa 11064814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 15015925 - 15015982
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||||||    
T  15015925 tcataagttctcccaaacagtctcacaaagcttatgtcagtagataagctcaaataag 15015982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 34736508 - 34736443
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||| ||||| | |||||||||||||||||   |||||||||||||||||| |||||||||||||    
T  34736508 ttctcccaaactgtctcacaaaacttatgtcaccagataagctcaaataagtcaatccaaacatgc 34736443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 35445832 - 35445775
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    ||||||||||| ||||| || ||||||||||||||||| |||||||| ||||||||||    
T  35445832 tcataaattctgtcaaagagtctcacaaaacttatgtcagtagataaactcaaataag 35445775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 12425657 - 12425713
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    |||| ||||| ||||||| ||||||||||||||| | ||||||||||||||||||||    
T  12425657 ataagttctcccaaacagtctcacaaaacttatgacagtagataagctcaaataagt 12425713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 3932654 - 3932595
Alignment:
Q  24 tctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||| |||||||| ||||||| | ||||||||||||||| ||| ||||||||||    
T  3932654 tctcaaacagtctcacaaagcttatgttgttagataagctcaaattagtcaatccaaaca 3932595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 9107179 - 9107240
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    ||||| ||||||  |||||||||||||||||  ||||||| ||||||||||| |||||||||    
T  9107179 ttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 10640035 - 10640104
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||   |||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  10640035 tcataagttctcccaaacaatatcacaaaacttatgtcagtagataaactcaaataagctaatccaaaca 10640104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 15246915 - 15246984
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||  || | |||||||||||| ||||||||||||||||||  |||||||||||    
T  15246915 tcataagttctcccaaacattctaataaaacttatgtcagtagataagctcaaataaacaaatccaaaca 15246984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32010027 - 32010096
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||||||||||| || |  ||||||||||  |||||||| ||||||||||| ||||||||||    
T  32010027 tcataagttctctcaaacagtctgaagaaacttatgtgagtagataaactcaaataagtcaatccaaaca 32010096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 32942676 - 32942745
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||| ||||||| |  |||||||||||||| ||||| ||||||  |||||| ||||||||||    
T  32942676 tcataaattctcccaaacagtcaaacaaaacttatgtcagtagaaaagctcgtataagtcaatccaaaca 32942745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 41419422 - 41419470
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  41419422 ctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 41534541 - 41534589
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  41534541 ctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41534589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 7674750 - 7674796
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    ||||||||||||| || ||||||||||||||||||||  ||||||||    
T  7674750 ctcacaaaacttaagtaggtagataagctcaaataagccaatccaaa 7674796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 7705986 - 7705917
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| |||| ||  ||||||||||||||   ||||||| |||||||||||| ||||||||||    
T  7705986 tcataagttctcccaaagagcgtcacaaaacttatgctagtagatatgctcaaataagtcaatccaaaca 7705917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 16937871 - 16937802
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||  ||||||  |||||||||||||||   |||||||||||||||||||  ||||||||||    
T  16937871 tcataagttcttccaaacactctcacaaaacttatgctagtagataagctcaaataagccaatccaaaca 16937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 22209791 - 22209746
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaa 80  Q
    |||| |||||||||| | |||||||||||||||||||| |||||||    
T  22209791 ctcagaaaacttatgccagtagataagctcaaataagtcaatccaa 22209746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 34102301 - 34102232
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||| | |||||||  |||||||||||||| |  ||| ||||||||||||||| | ||||||||    
T  34102301 tcataaattcccccaaacagtgtcacaaaacttatgccaatagttaagctcaaataagtgattccaaaca 34102232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 40426860 - 40426905
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagt 72  Q
    ||||||| ||||||||| |||||||  |||||||||||||||||||    
T  40426860 caaacagtctcacaaaatttatgtcattagataagctcaaataagt 40426905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 42582662 - 42582605
Alignment:
Q  28 aaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatg 85  Q
    |||||| |||||||||||||| ||  ||||||  ||||||||||| ||||||||||||    
T  42582662 aaacagcctcacaaaacttatatcattagataccctcaaataagtcaatccaaacatg 42582605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 9174938 - 9174970
Alignment:
Q  54 tagataagctcaaataagtaaatccaaacatgc 86  Q
    ||||||||||||||||||| |||||||||||||    
T  9174938 tagataagctcaaataagtcaatccaaacatgc 9174970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 35299872 - 35299916
Alignment:
Q  39 caaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| |||||  ||||||||||||||||||| ||||||||||    
T  35299872 caaaactcatgtcaatagataagctcaaataagtcaatccaaaca 35299916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25447220 - 25447164
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  25447220 caaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaaca 25447164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 584128 - 584196
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    ||||||||||||  |||||| |||||| ||||||||   |||||||||||||||||||| |||||||||    
T  584128 tcataaattctccaaaacagtctcacagaacttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 18405819 - 18405763
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||| ||||  ||||||| ||||||||||||||||| ||||||||||||||||||    
T  18405819 tcataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaaataa 18405763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 24085326 - 24085258
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    |||||| |||||  || ||| ||||||||||||||| |||||||||||||||||||||  |||||||||    
T  24085326 tcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaaataagccaatccaaac 24085258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 16073007 - 16072960
Alignment:
Q  36 tcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  16073007 tcacaaaacttatgtcattagataagctcaaataagtcaatccaaaca 16072960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 22203512 - 22203580
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||| ||||||| ||||||||| | |||||||||||||||||| |||| || ||||||||||    
T  22203512 tcataagttctc-caaacagtctcacaaaattaatgtcggtagataagctcgaatatgttaatccaaaca 22203580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 31365176 - 31365119
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| ||||| ||||||| ||||||||||||||| |  ||||||||||||||||||    
T  31365176 tcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaaataag 31365119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 39980811 - 39980880
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| |||||| |||||| |||||||||||||||   ||||||||||||||| |||  ||||||||||    
T  39980811 tcataagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaacaagccaatccaaaca 39980880  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 20170689 - 20170633
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||| |||||||||||  ||||||||||||||||||  ||||||||||    
T  20170689 caaacagtctcactaaacttatgtcactagataagctcaaataagccaatccaaaca 20170633  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 24684789 - 24684741
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||| |||||||||| | |||||||||||||||||||| ||||||||||    
T  24684789 ctcaaaaaacttatgccagtagataagctcaaataagttaatccaaaca 24684741  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 51929341 - 51929277
Alignment:
Q  18 aaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaac 82  Q
    ||||||||||||| ||  |||||||||||||| | ||| ||||| |||||||||| |||||||||    
T  51929341 aaattctctcaaatagtatcacaaaacttatgccagtaaataaggtcaaataagtcaatccaaac 51929277  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 21367749 - 21367816
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||| ||||| ||||||| | |||||||||||||  ||||||||| ||||||||||  ||||||||    
T  21367749 tcataagttctcccaaacagtcccacaaaacttatgctggtagataatctcaaataagccaatccaaa 21367816  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 3845544 - 3845498
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaa 67  Q
    |||| |||||||| ||||||||||||||| | |||||||||||||||    
T  3845544 ttctatcaaacagtctcacaaaacttatgccagtagataagctcaaa 3845498  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 5448533 - 5448583
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    |||||| | |||| || |||||||||||||| |||||||||||||||||||    
T  5448533 ttctctaatacagtcttacaaaacttatgtcagtagataagctcaaataag 5448583  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 26990181 - 26990143
Alignment:
Q  46 tatgtcggtagataagctcaaataagtaaatccaaacat 84  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  26990181 tatgtcagtagataagctcaaataagtcaatccaaacat 26990143  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 34610770 - 34610736
Alignment:
Q  38 acaaaacttatgtcggtagataagctcaaataagt 72  Q
    |||||||||||||| ||||||||||||||||||||    
T  34610770 acaaaacttatgtcagtagataagctcaaataagt 34610736  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 21872253 - 21872208
Alignment:
Q  44 cttatgtcggtagataagctcaaataagtaaatccaaacatgctta 89  Q
    |||||||| ||||||||| |||||||||| ||||||||||| ||||    
T  21872253 cttatgtcagtagataagatcaaataagttaatccaaacatactta 21872208  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 22667485 - 22667542
Alignment:
Q  15 cataaattctctcaaacagactcacaaaa-cttatgtcggtagataagctcaaataag 71  Q
    |||||| |||||||||||| |||||||   |||||||| |||||||||||||||||||    
T  22667485 cataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22667542  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 22724124 - 22724181
Alignment:
Q  15 cataaattctctcaaacagactcacaaaa-cttatgtcggtagataagctcaaataag 71  Q
    |||||| |||||||||||| |||||||   |||||||| |||||||||||||||||||    
T  22724124 cataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22724181  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 26911699 - 26911740
Alignment:
Q  40 aaaacttatgtcggtagataagctcaaataagtaaatccaaa 81  Q
    |||||||||||| |||||||| ||||||||||| ||||||||    
T  26911699 aaaacttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 33405155 - 33405114
Alignment:
Q  39 caaaacttatgtcggtagataagctcaaataagtaaatccaa 80  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  33405155 caaaacttatgtcagtagataaactcaaataagtcaatccaa 33405114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 34235081 - 34235012
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||| ||||||||||| | | | ||||||||||||  |||||||||||| ||||||| ||| ||||||    
T  34235081 tcataagttctctcaaacggtcacgcaaaacttatgttagtagataagctcgaataagtcaatacaaaca 34235012  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 46407863 - 46407895
Alignment:
Q  53 gtagataagctcaaataagtaaatccaaacatg 85  Q
    |||||||||||||||||||| ||||||||||||    
T  46407863 gtagataagctcaaataagtcaatccaaacatg 46407895  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 46478770 - 46478818
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||| ||  ||||||| |||||||||||| ||||||||||    
T  46478770 ctcacaaaacttacgttagtagatatgctcaaataagtcaatccaaaca 46478818  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 21405121 - 21405073
Alignment:
Q  35 ctcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  21405121 ctcacaaaacttatgtcagtatataagctcaaataagtcaatccaaaca 21405073  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 6536698 - 6536766
Alignment:
Q  16 ataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||||||| |||||||  |||||||||||||||| |||| ||| ||||||||| | |||||||||||||    
T  6536698 ataaattctcccaaacag--tcacaaaacttatgtcagtaggtaaactcaaataatttaatccaaacatgc 6536766  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 34404691 - 34404645
Alignment:
Q  37 cacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||    
T  34404691 cacaaaacttatgtcagttgataaactcaaataagtaaatccaaaca 34404645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 4163261 - 4163312
Alignment:
Q  40 aaaacttatgtcggtagataagctcaaataagtaaatccaaacatgcttata 91  Q
    |||||||||| | |||||||||||||||||||  ||||||||||||| ||||    
T  4163261 aaaacttatgccagtagataagctcaaataagccaatccaaacatgcctata 4163312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 4224882 - 4224933
Alignment:
Q  40 aaaacttatgtcggtagataagctcaaataagtaaatccaaacatgcttata 91  Q
    |||||||||| | |||||||||||||||||||  ||||||||||||| ||||    
T  4224882 aaaacttatgccagtagataagctcaaataagccaatccaaacatgcctata 4224933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 33089587 - 33089658
Alignment:
Q  14 tcataaattctctcaaacagactcacaaa-acttatgtcggtagataagctcaaataagtaaatccaaacat 84  Q
    |||||| |||||| ||| || |||||||| || |||||| |||||||||||||||||||| || ||||||||    
T  33089587 tcataagttctctgaaatagtctcacaaatacatatgtcagtagataagctcaaataagtcaacccaaacat 33089658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 10645373 - 10645303
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaacat 84  Q
    |||||| ||||| ||||||| || ||||||||||||||  ||||||| ||||||| ||  |||||||||||    
T  10645373 tcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagccaatccaaacat 10645303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 18612411 - 18612457
Alignment:
Q  37 cacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    |||||||||||||||||| || ||||||||| |||| ||||||||||    
T  18612411 cacaaaacttatgtcggttgaaaagctcaaaaaagttaatccaaaca 18612457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 35069585 - 35069543
Alignment:
Q  29 aacagactcacaaaacttatgtcggtagataagctcaaataag 71  Q
    ||||| || |||||||||||||| |||||||||||||||||||    
T  35069585 aacagtcttacaaaacttatgtcagtagataagctcaaataag 35069543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 35099121 - 35099187
Alignment:
Q  17 taaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||| ||||||| |||| |||||||||  || | |||| |||||||||||| ||||||||||    
T  35099121 taaattctcccaaacagcctcagaaaacttataccgatggataggctcaaataagtcaatccaaaca 35099187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 2455077 - 2455126
Alignment:
Q  21 ttctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    ||||| ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  2455077 ttctcccaaacagtctcacaaaacttatgttagtagataagttcaaataa 2455126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 848084 - 848139
Alignment:
Q  27 caaacagactcacaaaacttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||| ||||||||||||||| |  ||||||||||||||||||  ||||||||||    
T  848084 caaacagtctcacaaaacttatg-ctatagataagctcaaataaggcaatccaaaca 848139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 2455341 - 2455397
Alignment:
Q  14 tcataaattctctcaaacagactcacaaaacttatgtcggtagataagctcaaataa 70  Q
    |||||| |||||||||| ||  |||| ||||||||||  ||||||||||||||||||    
T  2455341 tcataagttctctcaaatagtttcaccaaacttatgtttgtagataagctcaaataa 2455397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 2455922 - 2455966
Alignment:
Q  44 cttatgtcggtagataagctcaaataagtaaatccaaacatgctt 88  Q
    |||||| |||||||||||||||||||||| ||| ||| |||||||    
T  2455922 cttatgccggtagataagctcaaataagtcaattcaatcatgctt 2455966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 32916947 - 32916986
Alignment:
Q  43 acttatgtcggtagataagctcaaataagtaaatccaaaca 83  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  32916947 acttatgtctgtagataagctcaaataag-aaatccaaaca 32916986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 33027706 - 33027746
Alignment:
Q  46 tatgtcggtagataagctcaaataagtaaatccaaacatgc 86  Q
    |||||| |||||||||||||||||| | |||||||||||||    
T  33027706 tatgtcagtagataagctcaaataaatcaatccaaacatgc 33027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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