View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_18 (Length: 241)
Name: NF16665_low_18
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 2947020 - 2947230
Alignment:
| Q |
17 |
actatgcaaccaactcatattacgtatgatggttgggaaaccagaaggaaaacaatagcgagttcccttcagcttcctgtaacaagagagaaatgagata |
116 |
Q |
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| T |
2947020 |
actatgcaaccaactcatattacgtatgatggttgggaaaccagaaggaaaacaatagcgagttcccttcagcttcctgtaacaagagagaaatgagata |
2947119 |
T |
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| Q |
117 |
acatgtgttgggttaattgaggtttctgatgccttttgtttgaatagactagcaaaaatatttgcggcatccttgaaatcaaccagcacccctatttgct |
216 |
Q |
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| T |
2947120 |
acatgtgttgggttaattgaggtttctgatgccttttgtttgaatagactagcaaaaatatttgcggcatccttgaaatcaaccagcacccctatttgct |
2947219 |
T |
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| Q |
217 |
ttaattcatct |
227 |
Q |
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||||||||||| |
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| T |
2947220 |
ttaattcatct |
2947230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 3012370 - 3012242
Alignment:
| Q |
44 |
gatggttgggaaaccagaaggaaaacaatagcgagttcccttcagcttcctgtaacaagagagaaatgagataacatgtgttgggttaattgaggtttct |
143 |
Q |
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|||||||| ||| |||||||||||| |||| ||||||| |||| |||| ||||| ||||||||| || |||||| | |||||||||| | |||| |
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| T |
3012370 |
gatggttgcgaattcagaaggaaaactatagtcggttccctccagcagcctgcaacaattgagaaatgacatgacatgttgttggttaattgaagcttct |
3012271 |
T |
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| Q |
144 |
gatgccttttgtttgaatagactagcaaa |
172 |
Q |
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| T |
3012270 |
gatgccttttgttcaaacagactagcaaa |
3012242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 227
Target Start/End: Complemental strand, 1506704 - 1506499
Alignment:
| Q |
22 |
gcaaccaactcatattacgtatgatggttgggaaaccagaaggaaaacaatagcgagttcccttcagcttcctgtaacaagagagaaatgagataacatg |
121 |
Q |
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||||||| |||| || ||||||||||||| |||| |||||||||||| ||| |||||| |||||| |||| ||||||||||||||||||| ||||| |
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| T |
1506704 |
gcaaccacttcattttccgtatgatggttgagaaatcagaaggaaaactgtagtcagttcctttcagcagcctgcaacaagagagaaatgagatgacatg |
1506605 |
T |
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| Q |
122 |
tgttgggttaattgaggtttctgatgccttttgtttgaatagactagcaaaaatatttgcggcatccttgaaatcaaccagcacccctatttgctttaat |
221 |
Q |
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| | ||||||||| |||| |||||||||||| ||||| || ||| | || ||||||||| ||||||||||||||||||| |||| | ||| |
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| T |
1506604 |
ttgtccgttaattgaattttccaatgccttttgttcaaatagcctttcaatttttttgatggcatccttaaaatcaaccagcacccctacttgcatcaat |
1506505 |
T |
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| Q |
222 |
tcatct |
227 |
Q |
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|||||| |
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| T |
1506504 |
tcatct |
1506499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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