View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_19 (Length: 240)
Name: NF16665_low_19
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 26563664 - 26563439
Alignment:
| Q |
1 |
aaaataaacaaacaacgaaaagtgtataaagtagacgatataaagtcacgtaatttgaataacatgatcactggtacctctaactttccgctcagctctg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26563664 |
aaaataaacaaacaacgaaaaatgtataaagtagacgatataaagtcatgtaatttgaataacatgatcactggtacctctaactttccgctcagctctg |
26563565 |
T |
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| Q |
101 |
aaattaggcgtttagaaagctcctccgcgtatgttgttcgatattcttgttggatataggcgcgctgcgtcgcatctcgatgagcaagaatattgatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26563564 |
aaattaggcgtttagaaagctcctccgcgtatgttgttcgatattcttgttggatataggcgcgctgcgtcgcatctcgatgagcaagaatattgatcac |
26563465 |
T |
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| Q |
201 |
agcacttgtgtcacagccaaatcctg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
26563464 |
agcacttgtgtcacagccaaatcctg |
26563439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 26558251 - 26558099
Alignment:
| Q |
74 |
gtacctctaactttccgctcagctctgaaattaggcgtttagaaagctcctccgcgtatgttgttcgatattcttgttggatataggcgcgctgcgtcgc |
173 |
Q |
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|||||||||||||||| || |||||||||| || || |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
26558251 |
gtacctctaactttcctcttagctctgaaactaagcatttagaaagctcctccgcgtatgttgtttcatattcttgttggatgaaggcgcgctgcgtcgc |
26558152 |
T |
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| Q |
174 |
atctcgatgagcaagaatattgatcacagcacttgtgtcacagccaaatcctg |
226 |
Q |
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| T |
26558151 |
atctcgatgagccagaatattgatcacaacacttgtgtcacagccaaatcctg |
26558099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 26551513 - 26551361
Alignment:
| Q |
74 |
gtacctctaactttccgctcagctctgaaattaggcgtttagaaagctcctccgcgtatgttgttcgatattcttgttggatataggcgcgctgcgtcgc |
173 |
Q |
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|||||||||| ||||| ||||||||||||||| |||||| || |||||||| | ||||||| | ||||||||||||| ||||| ||||| || || |
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| T |
26551513 |
gtacctctaattttcctttcagctctgaaattaagcgtttcgatagctcctcagaatatgttgctttgtattcttgttggaggtaggcacgctgtgtagc |
26551414 |
T |
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| Q |
174 |
atctcgatgagcaagaatattgatcacagcacttgtgtcacagccaaatcctg |
226 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
26551413 |
gtctcgatgagcaagaatattgatcacagcagttgtgtcacacccaaatcctg |
26551361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 50936353 - 50936507
Alignment:
| Q |
72 |
tggtacctctaactttccgctcagctctgaaattaggcgtttagaaagctcctccgcgtatgttgttcgatattcttgttggatataggcgcgctgcgtc |
171 |
Q |
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||||||||| |||||||||||||||| |||| | || ||| ||||||||||||| |||||| || ||||||||||||||||| ||||| ||||| ||| |
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| T |
50936353 |
tggtacctccaactttccgctcagcttcgaaaccaagctttttgaaagctcctccgagtatgtagtccgatattcttgttggatgtaggcacgctgtgtc |
50936452 |
T |
|
| Q |
172 |
gcatctcgatgagcaagaatattgatcacagcacttgtgtcacagccaaatcctg |
226 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
50936453 |
gcatctcgatgagcaagaatgttgatcacagcatttgtgtcacagccaaatcctg |
50936507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50936259 - 50936328
Alignment:
| Q |
1 |
aaaataaacaaacaacgaaaagtgtataaagtagacgatataaagtcacgtaatttgaataacatgatca |
70 |
Q |
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||||||||||||||| ||||| ||||| ||| ||| ||| ||||||| ||||||||||||||||||||| |
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| T |
50936259 |
aaaataaacaaacaatgaaaaatgtattaagaagaaaataaaaagtcatgtaatttgaataacatgatca |
50936328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 45508030 - 45508116
Alignment:
| Q |
142 |
tattcttgttggatataggcgcgctgcgtcgcatctcgatgagcaagaatattgatcacagcacttgtgtcacagccaaatcctgat |
228 |
Q |
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||||||||||||| ||||| ||||| || ||||||| ||||||||| |||||||||||||| || || ||||| |||||||||||| |
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| T |
45508030 |
tattcttgttggaggtaggcacgctgagtggcatctctatgagcaagtatattgatcacagcgctggtatcacacccaaatcctgat |
45508116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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