View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16665_low_21 (Length: 233)
Name: NF16665_low_21
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_21 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 33675561 - 33675467
Alignment:
| Q |
139 |
tcaaaacaagacttgttacgagcaaattaaatgtcatgagaatgagtcccaagtattttgattatatctccacaatattaaaatagatccatcat |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33675561 |
tcaaaacaagacttgttacgagcaaattaaatgtcatgagaatgagtcccaagtattttgattatatctccacaatattaaaatagatccatcat |
33675467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 33675718 - 33675605
Alignment:
| Q |
25 |
taactttctaacatggtgaacgactagggtttcaagaaataagggagttgaaaaacttagaattgttatattatctatatgttcaacattaaatcacagt |
124 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
33675718 |
taactttctaacatggtgaacgacgagggtttcaagaaataagggagttgaaaaacttaaaattgttttattatctatatgttcaacattaaatcatagt |
33675619 |
T |
|
| Q |
125 |
catcaagtaccagc |
138 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
33675618 |
catcaagtagcagc |
33675605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 104628 - 104536
Alignment:
| Q |
139 |
tcaaaacaagacttgttacgagcaaattaaatgtcatgagaatgagtcccaagtattttgattatatctccacaatattaaaatagatccatc |
231 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||||||||| | |||||||||||||| |||||| ||||| |||| |||||||| |
|
|
| T |
104628 |
tcaaaacaaaacttgttacgagcagattaaatgtcacgagaatgagtctcgagtattttgattatgtctccatgatattcaaatggatccatc |
104536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 104753 - 104681
Alignment:
| Q |
58 |
aagaaataagggagttgaaaaacttagaatt--gttatattatctatatgttcaacattaaatcacagtcatc |
128 |
Q |
| |
|
|||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
104753 |
aagaaataagggagttgaaagacatagaagtatgttatattatctatatgttcaacattaaattatagtcatc |
104681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University