View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_4 (Length: 489)
Name: NF16665_low_4
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 250 - 467
Target Start/End: Original strand, 47419319 - 47419537
Alignment:
| Q |
250 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacct |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47419319 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacct |
47419418 |
T |
|
| Q |
350 |
acctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttcatctctct |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47419419 |
acctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggcatttcatctctct |
47419518 |
T |
|
| Q |
450 |
at-acgaatgacaacaaaa |
467 |
Q |
| |
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|| |||||||||||||||| |
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| T |
47419519 |
ataacgaatgacaacaaaa |
47419537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 41788052 - 41787816
Alignment:
| Q |
16 |
cactttctagaactagcattggagttgctcttagtccaagtaaaaacggcagagctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagg |
115 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41788052 |
cactttttagaactaggattggagttgctcttagtccaagtaaaaacggcagagctgagagagacgaatgaatgaaaaactgagacatatgtcgaatagg |
41787953 |
T |
|
| Q |
116 |
gtccagagttggactacgtggttttacctgatagatatagtctgttataac-nnnnnnnnnaggtgtgacttctttctattgtgatttccatggtggttc |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |
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| T |
41787952 |
gtccagaggtggactacgtggttttacctgatagatatagtctgttataacttttttttttaggtgtgacttctttctattgttagttccatggtggttc |
41787853 |
T |
|
| Q |
215 |
atgaaatttaacacgtggttcgtcagtgaacgagcag |
251 |
Q |
| |
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||||||||||||||||||||||| |||| | |||||| |
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| T |
41787852 |
atgaaatttaacacgtggttcgttagtggaggagcag |
41787816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 250 - 463
Target Start/End: Original strand, 47390956 - 47391169
Alignment:
| Q |
250 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacatctattctacct |
349 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||| |
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| T |
47390956 |
agaacctgtattggtttttgtctgcaataaaaaggatggttcttagcataacgttgaaatctatctctaaccaccttaggaaaaatcatctattctgcct |
47391055 |
T |
|
| Q |
350 |
acctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttcatctctct |
449 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47391056 |
acctgttgttgcacttttgttaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttaggtatttcatctctct |
47391155 |
T |
|
| Q |
450 |
atacgaatgacaac |
463 |
Q |
| |
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| || ||||||||| |
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| T |
47391156 |
agacaaatgacaac |
47391169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 250 - 467
Target Start/End: Original strand, 47421775 - 47422009
Alignment:
| Q |
250 |
agaacctgtgttggtttttgtctacaagaaaaaggacggttcttagcataacgttgaaacctatctctaaccaccttaagaaaaaacat----------- |
338 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
47421775 |
agaacctgtattggtttttgt----aagaaaaaggatggttcttagcataacgttgaaatctatctttaaccaccttaagaaaacacattgtaagataaa |
47421870 |
T |
|
| Q |
339 |
---------ctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttc |
429 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47421871 |
gtaaactatctattctacctacctgttgttgcacttttgctaatgctatcctaagcatcggatcccccacaatccctttcataagccgtacaaaatgttc |
47421970 |
T |
|
| Q |
430 |
tttgggtatttcatctctctat-acgaatgacaacaaaa |
467 |
Q |
| |
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||| |||||||||||||||||| |||||||||||||||| |
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| T |
47421971 |
tttcggtatttcatctctctataacgaatgacaacaaaa |
47422009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 467
Target Start/End: Original strand, 47408183 - 47408308
Alignment:
| Q |
343 |
tctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttgggtatttca |
442 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||| |||||| |||||||||| ||||||||||||||| ||||| |||| | || ||||||| ||||||| |
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| T |
47408183 |
tctacctacctgttgctgcacttctgttaatgctttcctaatcatctgatcctccacaatccctttcaaaagccttacacactgatctttggatatttca |
47408282 |
T |
|
| Q |
443 |
tctctcta-tacgaatgacaacaaaa |
467 |
Q |
| |
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|||||||| || ||||||||||||| |
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| T |
47408283 |
tctctctagaacaaatgacaacaaaa |
47408308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 450
Target Start/End: Original strand, 47424609 - 47424723
Alignment:
| Q |
336 |
catctattctacctacctgttgttgcacttttgctaatgctatcctaagcatctgatcccccacaatccctttcataagccgtacaaaatgttctttggg |
435 |
Q |
| |
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|||||| ||||| ||||||||| ||||||| || ||||| | |||||||||| | ||||||||| |||||||||||||||||||| || | ||||| |
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| T |
47424609 |
catctaatctacgtacctgttggtgcacttctgttaatgttgatataagcatctgcttccccacaatgcctttcataagccgtacaaattgatgtttgga |
47424708 |
T |
|
| Q |
436 |
tatttcatctctcta |
450 |
Q |
| |
|
| |||||||||||| |
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|
| T |
47424709 |
cacttcatctctcta |
47424723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 10866087 - 10866054
Alignment:
| Q |
16 |
cactttctagaactagcattggagttgctcttag |
49 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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| T |
10866087 |
cactctctagaactagcattggagttgctcttag |
10866054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 1331676 - 1331648
Alignment:
| Q |
21 |
tctagaactagcattggagttgctcttag |
49 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
1331676 |
tctagaactagcattggagttgctcttag |
1331648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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