View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_6 (Length: 461)
Name: NF16665_low_6
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 44579409 - 44579869
Alignment:
| Q |
1 |
ttgaaattcaagtggttagtgccgcatggtagtatacttaacttgcattaatttcgatacactcttccatgaggnnnnnnnnn--gagtatatttttgct |
98 |
Q |
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| T |
44579409 |
ttgaaattcaagtgattagtgccgcatggtagtatacttaacttgcattactttcgatacactcttccatgagttttttttttttgagtatatttttgct |
44579508 |
T |
|
| Q |
99 |
cccaatgcactttggactcgcaaagagttgaataaatgactcttaagatattaatggtgtttatatataggaacggagcgagtaaaagtctatattagtc |
198 |
Q |
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| T |
44579509 |
cccaatgcactttggactcgcaaagagttgaataaatgactcttaagatataaatggtgtttatatacagggacggagcgagtaaaagtctatattagtc |
44579608 |
T |
|
| Q |
199 |
tactctatcaat-------------atgtttataaagtttgagaaaaaggatatacattgttattgtaaactagttttacactagcctataattcttcta |
285 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44579609 |
tactctatcaattttttatgattatatgtttataaagtttgagaaaaaggatatacattgttattgtaaactagttttacgctagcctataattcttcta |
44579708 |
T |
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| Q |
286 |
tgcaaaactcgagtggtttatgaaaatttgagaaataggaacaagacaatcattttgaaaatttataggcaagacttaagagtggattcaggtcaagttg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44579709 |
tgcaaaactcgagtggtttatgaaaatttgagaaataggaacaagacaatcattttgaaaatttataggcaagacttaagagtggattcaggtcaagttg |
44579808 |
T |
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| Q |
386 |
aaattagaccaataatcgtgcgtgtcctctcttgcaagcatagcaaggagggagatgataa |
446 |
Q |
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| T |
44579809 |
aaattagaccaataatcgtgcgtgttctctcttgcaagcatagcaaggagggagatgataa |
44579869 |
T |
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