View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_7 (Length: 456)
Name: NF16665_low_7
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Original strand, 25990361 - 25990784
Alignment:
| Q |
19 |
ctatctaccataatgttcatcagtgatcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990361 |
ctatctaccataatgttcatcagtgatcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgcc |
25990460 |
T |
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| Q |
119 |
atttccctcggtctccaagcatacaacacgctgcctcaaatcacgcaattccctttccatgagaaaaattctttccttgaaggatagattctgttcttca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25990461 |
atttccctcggtctccaagcatacaacacgctgcctcaaatcactcaattccctttccatgagaaaaattctttccttaaaggatagattctgttcttca |
25990560 |
T |
|
| Q |
219 |
agatgtgcgatttgcaaatcttgttcatcaactctattctctaaactatattcatcacctgaacttggatatatcatctcaaacctgctcaaatcattgt |
318 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25990561 |
agatgtgtgatttgcaaatcttgctcatcaactctattctctaaactatgttcatcacctgaacttggatatatcatctcaaacctgctcaaatcattgt |
25990660 |
T |
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| Q |
319 |
tcaatctcttctcaccctccaaacccccaccgccattgttttcgccggagttttcctttcctgacctgagacggattaggcctttcattgtgccatatcc |
418 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25990661 |
tcaatctcttctcaacctccaaaaccccaccgccattgttttcgccggagttttcctttcctgacctgagacggattagacctttcattgtgccatatcc |
25990760 |
T |
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| Q |
419 |
gtcaactccccacttttcctttgc |
442 |
Q |
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|||||||||||||||||||||||| |
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| T |
25990761 |
gtcaactccccacttttcctttgc |
25990784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 45 - 332
Target Start/End: Original strand, 25968318 - 25968609
Alignment:
| Q |
45 |
tcaccatttccgacgctcttctccgagcaaacatctatgccgttgaaattctcagactcacgatcaccagcgccatttccctc-ggtctccaagcataca |
143 |
Q |
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||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||| ||||| | |||||| ||||||||| |
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| T |
25968318 |
tcaccattttcgatgctcttctccaagcaaacatcttggtcgttgaaattctcagactcgttatcaccagcgccaattccccccggtctcaaagcataca |
25968417 |
T |
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| Q |
144 |
acacgctgcctcaaatcacgcaattccctttccatgagaaaaattctttccttgaaggatagattctgttcttcaagatgtgcgatttgcaaatcttgtt |
243 |
Q |
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|||||||||||||| |||| ||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||| |||| |||||| |||| |
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| T |
25968418 |
acacgctgcctcaagtcacccaattccctttccatgagaaaaattctttccttaagtgttagattttgttcttcaagatgtttaattttcaaatcatgtt |
25968517 |
T |
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| Q |
244 |
catcaactctattctctaaactatattcatcacctgaac---ttggatatatcatctcaaacctgctcaaatcattgttcaatctcttctca |
332 |
Q |
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||||||| |||||||| ||| ||| || |||||| ||| |||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
25968518 |
catcaaccctattctccaaattatgtttatcaccacaacttgttggatatatcatctcaaacctacttaaatcattgttcaatctcttctca |
25968609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 25968669 - 25968722
Alignment:
| Q |
386 |
gagacggattaggcctttcattgtgccatatccgtcaactccccacttttcctt |
439 |
Q |
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||||||||||||||||||||| ||||||||| | || | ||||||||||||||| |
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| T |
25968669 |
gagacggattaggcctttcatggtgccatatgcatccagtccccacttttcctt |
25968722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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