View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16665_low_8 (Length: 407)
Name: NF16665_low_8
Description: NF16665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16665_low_8 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 397
Target Start/End: Original strand, 25816443 - 25816829
Alignment:
| Q |
16 |
gaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagttataag---agttacaatttgcatgttgct |
112 |
Q |
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| T |
25816443 |
gaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagttataggtcgagttacaatttgcatgttgct |
25816542 |
T |
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| Q |
113 |
tgtgtga--gggaaatgttggtggagaattggctcaatttatatatggaacatggtaaaggaagtggtttacagaatacattgtatgctgcacataacag |
210 |
Q |
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| T |
25816543 |
tgtgttatagggaaatgttggtggagaattggctcaatttatatatggaacatggtaaaggaagtggtttacagaatacattgcatgctacacataacag |
25816642 |
T |
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| Q |
211 |
tagtagagggagtaaagggaataaggtgaaaaagtctcgagcttgaacaacatgtaacttaacagaatctatcttttgtcttgtctttttgttttagtgt |
310 |
Q |
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| T |
25816643 |
tagtagagggagtaaagggaataaggtgaaaaagtctcgagcttgaacaacatgtaacttaacagaatctatcttttgtcttgtctttttgttttagcgt |
25816742 |
T |
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| Q |
311 |
gttatataacccttatgttttgtttagtaccataagatgatgtgtctccatgacatattaatgtagggaatggaaactttacctttg |
397 |
Q |
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| T |
25816743 |
gttatagaacccttatgttttgtttagtaccacaagatgatgtgtctccttgacatattaatgtagggaatggaaactttacctttg |
25816829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 25802393 - 25802564
Alignment:
| Q |
16 |
gaaactttacctttatagaaaagtgagttcaccatgtcaccgttgtggaagaaaaggacgtagctggagtta------------taagagttacaatttg |
103 |
Q |
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| T |
25802393 |
gaaactttaccttcacaggaaagtgagttcaccatgtcaccgttgcggaagaaaaggacgtagctggagttatagatcgaactgtaagagttacaatttg |
25802492 |
T |
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| Q |
104 |
catgttgcttgtgtgagggaaatgttggtggagaattggctcaatttatatatggaacatggtaaaggaagt |
175 |
Q |
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| T |
25802493 |
catgtggcctgtgtgagggaaatgctggtggaaaattggtacaacttatatatgggacatggtaaaggaagt |
25802564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 108813 - 108672
Alignment:
| Q |
46 |
accatgtcaccgttgtggaagaaaaggacgtagctggagttata------------agagttacaatttgcatgttgcttgtgtgagggaaatgttggtg |
133 |
Q |
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| T |
108813 |
accatgtcaccgttgtgggagaaaagcacgtagctggagttatagatcgaactgtaagagttacaatttacatgtggcttgtgtgagggaaatgctggtg |
108714 |
T |
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| Q |
134 |
gagaattggctcaatttatatatggaacatggtaaaggaagt |
175 |
Q |
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| T |
108713 |
gaaaattggtacaacttatatatgggacatggtaaaggaagt |
108672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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