View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_high_3 (Length: 531)
Name: NF16666_high_3
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 11 - 515
Target Start/End: Original strand, 34826611 - 34827115
Alignment:
| Q |
11 |
tgagatgaaggaagaatcgacatttacactagaaagtctacttttagagaatctcactttcaaaccagaagctaactcaaatcatcttagaacaatcttc |
110 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826611 |
tgagatgaaggaagattcgacatttacactagaaagtctacttttagagaatctcacgttcaaaccagaagctaactcaaatcatcttagaacaatcttc |
34826710 |
T |
|
| Q |
111 |
attacccacaattttactacactagcctccctagttaaaagagatattgtttggttcattgaaccatccagtcccgcaaccacaagaagaaacaggaatt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826711 |
attacccacaattttactacactagcctccctagttaaaagagatattgtttggttcattgaaccatccagtcccgcaaccacaagaagaaacaggaatt |
34826810 |
T |
|
| Q |
211 |
gaaccggcaaatatccatgctttagaccctacaaatgtctaattattcagcggaacagcgattaatcagaacagataaaccttgaatatgcacatgacct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826811 |
gaaccggcaaatatccatgctttagaccctacaaatgtctaattattcagcggaacagcgattaatcagaacagataaaccttgaatatgcacatgacct |
34826910 |
T |
|
| Q |
311 |
tatccaagctctcctctctgcctatttcttcatatgcattgttgcatgtatgcagtcttgagcggctaggcttagtatttttaatttcctttgcttttag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826911 |
tatccaagctctcctctctgcctatttcttcatatgcattgttgcatgtatgcagtcttgagcggctaggcttagtatttttaatttcctttgcttttag |
34827010 |
T |
|
| Q |
411 |
tatcataattcatgaaatttgattcagactttattgtatacttcagcatagcacatcttatgcgtaagttttttatttcttcaaataaatttctttgctt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34827011 |
tatcataattcatgaaatttgattcagactttattgtatacttcagcatagcacatcttatgcgtaagttttttatttcttcaaataaatttctttgctt |
34827110 |
T |
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| Q |
511 |
attaa |
515 |
Q |
| |
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||||| |
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| T |
34827111 |
attaa |
34827115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 6843144 - 6843087
Alignment:
| Q |
13 |
agatgaaggaagaatcgacatttacactagaaagtctacttttagagaatctcacttt |
70 |
Q |
| |
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|||| |||||||||||||| |||||| ||||||| |||| ||||||||||||||||| |
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| T |
6843144 |
agataaaggaagaatcgacgtttacatcagaaagtatactcttagagaatctcacttt |
6843087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 9661851 - 9661908
Alignment:
| Q |
13 |
agatgaaggaagaatcgacatttacactagaaagtctacttttagagaatctcacttt |
70 |
Q |
| |
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|||| |||||||||||||| |||| || ||||||| |||| ||||||||||||||||| |
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| T |
9661851 |
agataaaggaagaatcgacgtttataccagaaagtatactcttagagaatctcacttt |
9661908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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