View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16666_high_6 (Length: 459)

Name: NF16666_high_6
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16666_high_6
NF16666_high_6
[»] chr4 (8 HSPs)
chr4 (36-450)||(32823503-32823927)
chr4 (36-456)||(13769674-13770099)
chr4 (153-386)||(31940211-31940444)
chr4 (153-456)||(24783296-24783599)
chr4 (336-428)||(19032833-19032925)
chr4 (40-117)||(24783645-24783722)
chr4 (381-456)||(19032758-19032833)
chr4 (352-401)||(19032937-19032986)
[»] chr7 (4 HSPs)
chr7 (36-456)||(2829367-2829795)
chr7 (36-456)||(304322-304750)
chr7 (161-332)||(7527620-7527794)
chr7 (412-456)||(45809677-45809721)
[»] chr5 (3 HSPs)
chr5 (171-450)||(17172173-17172452)
chr5 (306-456)||(8403615-8403765)
chr5 (56-116)||(17172054-17172114)
[»] chr6 (5 HSPs)
chr6 (166-450)||(7639759-7640041)
chr6 (255-456)||(30383968-30384168)
chr6 (355-450)||(3886382-3886477)
chr6 (355-450)||(583040-583132)
chr6 (36-238)||(30385341-30385552)
[»] chr2 (5 HSPs)
chr2 (166-435)||(25280155-25280417)
chr2 (355-450)||(1592812-1592904)
chr2 (355-450)||(36314295-36314387)
chr2 (279-375)||(10413029-10413125)
chr2 (391-456)||(5381110-5381175)
[»] chr8 (2 HSPs)
chr8 (355-450)||(18606260-18606355)
chr8 (406-456)||(2812313-2812363)
[»] chr3 (1 HSPs)
chr3 (377-450)||(35734185-35734258)
[»] chr1 (1 HSPs)
chr1 (412-456)||(7493726-7493770)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 36 - 450
Target Start/End: Complemental strand, 32823927 - 32823503
Alignment:
Q  36 cttctacgcttaagtagagctttggatcctaacaacaattacaagaaattcaacattgataatatttgcaggttagcatgtattcttta----------t 125  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||          |    
T  32823927 cttctacgtttaagtacagctttggatcctagcaacaattacaaggaattcaacattgataatatttgcaggttagcatgtagtctttactgtcttgact 32823828  T
Q  126 tccttgactnnnnnnnngttcacttgcatttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagca 225  Q
    |  ||||||        ||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||| || |||||||||||||||| || ||||    
T  32823827 ttgttgactaaaaaaaagttcatttgtatttactaatatgttacattaattatatttgtagattagcatagatttactattctaatgatttcactgagca 32823728  T
Q  226 agaaagaattcatttgaggttgcaattaagtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaatta 325  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | | ||| |||||||||||||||    
T  32823727 agaaagaattcatttgaagttgcaattaagtcattacattgctgatatacctcagtctttttaaaatataacaacactctttgaattgtgcaaaaaatta 32823628  T
Q  326 gtagaatcagggaagtcaaggcgttatcatttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttct 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||||||  ||||||| ||||||||||||    
T  32823627 gtagaatcagggaagtcaaggcgttatcatttaattgatagattgattcgccttgttctaacactcaccgtctccacaacgacaacagagagagctttct 32823528  T
Q  426 catcaatgaaaaatatcaagacaaa 450  Q
    |||||||||||||| ||||||||||    
T  32823527 catcaatgaaaaatctcaagacaaa 32823503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 36 - 456
Target Start/End: Original strand, 13769674 - 13770099
Alignment:
Q  36 cttctacgcttaagtagagctttggatcctaacaacaattacaagaaattcaacattgataatatttgcaggttagcatgtattctttattc-cttgact 134  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||||||   |||||||||||||||||| | ||||||  ||| |||    
T  13769674 cttctacgtttaagtacagctttggatcctagcaacaattacaaggaattcaacattgata---tttgcaggttagcatgtagtttttattgtcttaact 13769770  T
Q  135 nnnnnnnn--------gttcacttgcatttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaa 226  Q
                    ||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  13769771 tcattgtctacaaagagttca-ttgtatttactaatatattgcattaattatatttgtaggttagcagagacttactattctaatgatttcactgagcaa 13769869  T
Q  227 gaaagaattcatttgaggttgcaattaagtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattag 326  Q
    |||||| ||||| | || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  13769870 gaaagacttcatcttagattgcaattaagtcattacattgttgatatacctcagtcttttcaaaatataacaacactctctgagttgtgcaaaaaattag 13769969  T
Q  327 tagaatcagggaagtcaaggcgttatcatttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctc 426  Q
    ||||||| | ||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  || ||| |||||||||||||    
T  13769970 tagaatctgagaaatcaaagcgctatcatttaattgatagattgattcgtcttgttttgacactcccagtctcgacagcaacgacagagagagctttctc 13770069  T
Q  427 atcaatgaaaaatatcaagacaaagcaaag 456  Q
    ||||||||||||| |||||||||| |||||    
T  13770070 atcaatgaaaaatctcaagacaaaacaaag 13770099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 153 - 386
Target Start/End: Complemental strand, 31940444 - 31940211
Alignment:
Q  153 atttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaagaaagaattcatttgaggttgcaatt 252  Q
    ||||||| ||||||||| |||||||||||||||||||||| || | || ||||||||||||||||  | | |||||||||||||||||||||||||||||    
T  31940444 atttactgatatgttacgttaattatatttgtaggttagccgatagttactattctaatgatttcattgaacaagaaagaattcatttgaggttgcaatt 31940345  T
Q  253 aagtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttat 352  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||| |||||||    
T  31940344 aagtcattacattgctgatataccttagtcttttcaaaatataacaacactctctgaattttgcaaaaaattagtagaatcagggaagtcaaagcgttat 31940245  T
Q  353 catttaattgatagattgattcgccttgttttga 386  Q
    ||||||||||||||||||||||| ||||||||||    
T  31940244 catttaattgatagattgattcgtcttgttttga 31940211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 153 - 456
Target Start/End: Complemental strand, 24783599 - 24783296
Alignment:
Q  153 atttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaagaaagaattcatttgaggttgcaatt 252  Q
    ||||| || ||||||||||| |||||| |||||||||||||||||||| ||||| | ||| |||| |||| ||||||  |||||||  ||||||||||||    
T  24783599 atttattagtatgttacattgattatagttgtaggttagcagagactttctatttttatggtttcactaatcaagaacaaattcatccgaggttgcaatt 24783500  T
Q  253 aagtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttat 352  Q
    ||| |||| ||||||||||||   ||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||  ||||||||||  || |||    
T  24783499 aagacattgcattgctgatatgtgtcagtcttttcaaaatataacaacattttctgagttgtgaaaaagattagtagaattggggaagtcaaaacgctat 24783400  T
Q  353 catttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaagc 452  Q
    ||||||||| | ||||||||||| ||||||||||| |   |||||||||||   |||||| |||||||||||||| ||||||||||| |||||| ||| |    
T  24783399 catttaatttagagattgattcgtcttgttttgacccatgcagtctccacaacaacaacaaagagagctttctcaacaatgaaaaatctcaagataaaac 24783300  T
Q  453 aaag 456  Q
    ||||    
T  24783299 aaag 24783296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 19032925 - 19032833
Alignment:
Q  336 ggaagtcaaggcgttatcatttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcat 428  Q
    ||||||||| |||||||||||||||||||||||||||||  |||||||| |||||| || |||||||||  |||||  ||||| |||||||||    
T  19032925 ggaagtcaatgcgttatcatttaattgatagattgattcatcttgttttaacactctcaatctccacagcaacaacgaagagaactttctcat 19032833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 24783722 - 24783645
Alignment:
Q  40 tacgcttaagtagagctttggatcctaacaacaattacaagaaattcaacattgataatatttgcaggttagcatgta 117  Q
    |||| ||||||| | ||||||||||||  ||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  24783722 tacgtttaagtacaactttggatcctagaaacaactacaaggaattcaacattgataatatttgcaggttagcttgta 24783645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 456
Target Start/End: Complemental strand, 19032833 - 19032758
Alignment:
Q  381 ttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaagcaaag 456  Q
    |||| ||||||||| |||||||||  |||||  ||||| |||||||||||||||||||| |||||||||| |||||    
T  19032833 ttttaacactcccaatctccacagcaacaacgaagagaactttctcatcaatgaaaaatctcaagacaaaacaaag 19032758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 19032986 - 19032937
Alignment:
Q  352 tcatttaattgatagattgattcgccttgttttgacactcccagtctcca 401  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  19032986 tcatttaattgatagattgattcgtcttgttttaacactcccaatctcca 19032937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 36 - 456
Target Start/End: Original strand, 2829367 - 2829795
Alignment:
Q  36 cttctacgcttaagtagagctttggatcctaacaacaattacaagaaattcaacattgataatatttgcaggttagcatgtattctttattc-cttgact 134  Q
    |||||||| ||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||  ||| |||    
T  2829367 cttctacgtttaagtacaactttggatcctagcaacaattacaaggaattcaacattgataatatttgcaggttagcatgtagtttttattgtcttaact 2829466  T
Q  135 nnnnnnnn--------gttcacttgcatttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaa 226  Q
                    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  2829467 tcattgtctacaaagagttca-ttgtatttactaatatgttacattaattatatttgtaggttagcagagacttactattctaatgatttcactgagcaa 2829565  T
Q  227 gaaagaattcatttgaggttgcaattaagtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattag 326  Q
    |||||| ||||| | | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  2829566 gaaagacttcatcttaagttgcaattaagtcattacattgttgatatacctcagtcttttcaaaatataacaacactctctgagttgtgcaaaaaattag 2829665  T
Q  327 tagaatcagggaagtcaaggcgttatcatttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctc 426  Q
    |||||||   ||| |||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||   || | | |||||||||||||    
T  2829666 tagaatcttagaaatcaaagcgctaacatttaattgatagattgattcgtcttgttttgacactcccagtctcgacaacaacgatagagagagctttctc 2829765  T
Q  427 atcaatgaaaaatatcaagacaaagcaaag 456  Q
    ||||||||||||| |||||||||| |||||    
T  2829766 atcaatgaaaaatctcaagacaaaacaaag 2829795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 36 - 456
Target Start/End: Complemental strand, 304750 - 304322
Alignment:
Q  36 cttctacgcttaagtagagctttggatcctaacaacaattacaagaaattcaacattgataatatttgcaggttagcatgtattctttattc-cttgact 134  Q
    |||||||| ||||||| | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||  ||| |||    
T  304750 cttctacgtttaagtacaactttggatcctagcaacaattacaaggaattcaacattgataatatttgcaggttagcatgtagtttttattgtcttaact 304651  T
Q  135 nnnnnnnn--------gttcacttgcatttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaa 226  Q
                    ||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  304650 tcattgtctacaaagagttca-ttgtatttactaatatttttcattaattatatttgtaggttagcagagacttactattctaatgatttcactgagcaa 304552  T
Q  227 gaaagaattcatttgaggttgcaattaagtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattag 326  Q
    |||||| ||||| | | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  304551 gaaagacttcatcttatgttgcaattaagtcattacattgttgatatacctcagtcttttcaaaatataacaacactctctgagttgtgcaaaaaattag 304452  T
Q  327 tagaatcagggaagtcaaggcgttatcatttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctc 426  Q
    |||||||   ||| |||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||  || | | |||||||||||||    
T  304451 tagaatcttagaaatcaaagcgctaacatttaattgatagattgattcgtcttgttttgacactcccagtctcaacagcaacgatagagagagctttctc 304352  T
Q  427 atcaatgaaaaatatcaagacaaagcaaag 456  Q
    ||||||||||||| |||||||||| |||||    
T  304351 atcaatgaaaaatctcaagacaaaacaaag 304322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 332
Target Start/End: Original strand, 7527620 - 7527794
Alignment:
Q  161 atatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaagaaagaattcatttgaggttgcaattaagtcatt 260  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||||||||||||   | ||||||||||| |||| ||||||||||||||||||||||    
T  7527620 atatgttacattaattatatttgtaggttataagagatttactattctaatgattttattgagcaagaaagatttcaattgaggttgcaattaagtcatt 7527719  T
Q  261 a---cattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaat 332  Q
    |   || || ||| |||  | ||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  7527720 attacaatggtgacataacttagtcttttcaaaatataacaatactatctgagttgtgcaaaaaactagtagaat 7527794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 45809721 - 45809677
Alignment:
Q  412 atagagagctttctcatcaatgaaaaatatcaagacaaagcaaag 456  Q
    |||||||| ||||||||||||||||||| |||||||||| |||||    
T  45809721 atagagagttttctcatcaatgaaaaatctcaagacaaaacaaag 45809677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 171 - 450
Target Start/End: Original strand, 17172173 - 17172452
Alignment:
Q  171 ttaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaagaaagaattcatttgaggttgcaattaagtcattacattgctga 270  Q
    |||||||||||||||||||| |||||||||  |||||| |||||||| || ||||| ||||||||||||| ||||||||||||||||||||||||| |||    
T  17172173 ttaattatatttgtaggttaccagagactttttattcttatgatttccctgagcaataaagaattcatttaaggttgcaattaagtcattacattgttga 17172272  T
Q  271 tatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttatcatttaattgatagattg 370  Q
    ||||| | ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  17172273 tataccttagtcttttcaaaatataacaacactctctgagttgtgaaaaaaattagtagaatcagggaagtcaaagcattatcatttaattaatagattg 17172372  T
Q  371 attcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    ||||| | |||||| ||||||||||| ||||||  ||||||| |||||||||||||||||||||||||| ||||||||||    
T  17172373 attcgtcatgttttaacactcccagtatccacaacgacaacaaagagagctttctcatcaatgaaaaatctcaagacaaa 17172452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 456
Target Start/End: Original strand, 8403615 - 8403765
Alignment:
Q  306 ctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttatcatttaattgatagattgattcgccttgttttgacactcccagtctccacagt 405  Q
    ||||||||||||||| ||||||||||||   ||| |||  | |||||||||||||||||||||||||||  |||||||| ||||| | | ||||||||      
T  8403615 ctgagttgtgcaaaatattagtagaatcgaagaaatcattgtgttatcatttaattgatagattgattcttcttgttttaacacttctaatctccacaac 8403714  T
Q  406 gacaacatagagagctttctcatcaatgaaaaatatcaagacaaagcaaag 456  Q
     ||||   ||||| |||||||||||||||||||| |||||| ||| |||||    
T  8403715 aacaatggagagaactttctcatcaatgaaaaatctcaagataaaacaaag 8403765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 17172054 - 17172114
Alignment:
Q  56 tttggatcctaacaacaattacaagaaattcaacattgataatatttgcaggttagcatgt 116  Q
    ||||||||||| ||||||| ||||| ||||||||||||||| |||||||| ||||||||||    
T  17172054 tttggatcctagcaacaatcacaaggaattcaacattgatagtatttgcaagttagcatgt 17172114  T

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Target: chr6 (Bit Score: 153; Significance: 6e-81; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 166 - 450
Target Start/End: Original strand, 7639759 - 7640041
Alignment:
Q  166 ttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaagaaagaattcatttgaggttgcaattaagtcattacatt 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7639759 ttacattaattatatttgtaggttagcagagactttctattcttacgatttcactgagcaagaaagaattcatttgaggttgcaattaagtcattacatt 7639858  T
Q  266 gctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttatcatttaattgata 365  Q
      |||||||| ||||||||||||||||||||||||  | |||||    ||||||||||||||| |||| |||||||||| ||||||||||||||||||||    
T  7639859 catgatatacctcagtcttttcaaaatataacaacgctctctga----tgcaaaaaattagtataatcggggaagtcaaagcgttatcatttaattgata 7639954  T
Q  366 gattgattcgccttgttttga---cactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
     ||||||||| |||||||| |    ||||||||||||||||   |||||||||||| ||||||| |||||||||||| ||||| ||||    
T  7639955 aattgattcgtcttgtttttatagtactcccagtctccaca-caacaacatagagaactttctcgtcaatgaaaaatctcaaggcaaa 7640041  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 255 - 456
Target Start/End: Complemental strand, 30384168 - 30383968
Alignment:
Q  255 gtcattacattgctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttatca 354  Q
    |||||||||||| |||||||| |||| |||||||||||||||||| | | ||  ||||||||||||||||||||||||| | ||| |||| ||| |||||    
T  30384168 gtcattacattgttgatatacctcagacttttcaaaatataacaaaactctc--agttgtgcaaaaaattagtagaatctgagaaatcaaagcgctatca 30384071  T
Q  355 tttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagc-tttctcatcaatgaaaaatatcaagacaaagca 453  Q
    ||| ||||||||||||||||| |||||||||||||||| |||||| ||||  || ||| ||||||| ||||||| ||||||||||  |||||||||| ||    
T  30384070 ttttattgatagattgattcgtcttgttttgacactcctagtctcgacagcaacgacaaagagagcttttctcagcaatgaaaaagctcaagacaaaaca 30383971  T
Q  454 aag 456  Q
    |||    
T  30383970 aag 30383968  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 355 - 450
Target Start/End: Original strand, 3886382 - 3886477
Alignment:
Q  355 tttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| |  ||||||| || |||||||||||||||| |||||| ||||||||||    
T  3886382 tttaattgatagattgattcaccatgttttgacactcccagtctccataacgacaacagagcgagctttctcatcaataaaaaatctcaagacaaa 3886477  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 583132 - 583040
Alignment:
Q  355 tttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||   | || ||| || ||||||||||||||||||||||| ||||||||||    
T  583132 tttaattgatagattgattcaccttgttttgacactcccagtctcca---taacgacaaagcgagctttctcatcaatgaaaaatctcaagacaaa 583040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 30385552 - 30385341
Alignment:
Q  36 cttctacgcttaagtagagctttggatcctaacaacaattacaagaaattcaac----attgataatatttgcaggttagcatgtattctttatt-cctt 130  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||    |||||||||||||||||||||||||||| | ||||||  |||    
T  30385552 cttctacgtttaagtacagctttggatcctagcaacaattacaag-aattcaacatatattgataatatttgcaggttagcatgtagtttttattgtctt 30385454  T
Q  131 gact--------nnnnnnnngttcacttgcatttactaatatgttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaa 222  Q
     |||                ||||| ||| ||||||||||||||| |||||||||||||| |||||||||| |||||| ||||  |||||||||| || |    
T  30385453 aacttcattgtctacagagagttca-ttgtatttactaatatgttgcattaattatatttataggttagcaaagacttactat--taatgatttcactga 30385357  T
Q  223 gcaagaaagaattcat 238  Q
    |||||||||| |||||    
T  30385356 gcaagaaagacttcat 30385341  T

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Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 435
Target Start/End: Original strand, 25280155 - 25280417
Alignment:
Q  166 ttacattaattatatttgtaggttagcagagacttgctattctaatgatttctctaagcaagaaagaattcatttgaggttgcaattaagtcattacatt 265  Q
    ||||||||||||| ||||||||||||||||||| | ||||||| |||||||  || |||||||||||  |||||||||||||||| ||||||||||||||    
T  25280155 ttacattaattatgtttgtaggttagcagagacgttctattcttatgattttactgagcaagaaagagctcatttgaggttgcaagtaagtcattacatt 25280254  T
Q  266 gctgatatacatcagtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttatcatttaattgata 365  Q
    ||| |||||  |||||||||||||||| |||||||| | | ||    |||||||||||||||| |||| ||||| |||| || |||||||||||||||||    
T  25280255 gctaatatatctcagtcttttcaaaatttaacaacactctttg----gtgcaaaaaattagtataatcggggaaatcaaagcattatcatttaattgata 25280350  T
Q  366 gattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaa 435  Q
     ||||||||| |||||||||||||||| | ||||||||   |||| | ||||||||||||||||||||||    
T  25280351 tattgattcgtcttgttttgacactcctaatctccaca---acaagagagagagctttctcatcaatgaa 25280417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 1592904 - 1592812
Alignment:
Q  355 tttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||   | || ||| || ||||||||||||||||||||||| ||||||||||    
T  1592904 tttaattgatagattgattcaccttgtttttacactcctagtctcca---taacgacaaagcgagctttctcatcaatgaaaaatctcaagacaaa 1592812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 36314387 - 36314295
Alignment:
Q  355 tttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||   | || ||| || ||||||||||||||||||||||| ||||||||||    
T  36314387 tttaattgatagattgattcatcttgttttgacactcccaatctcca---taacgacaaagcgagctttctcatcaatgaaaaatctcaagacaaa 36314295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 10413029 - 10413125
Alignment:
Q  279 agtcttttcaaaatataacaacattatctgagttgtgcaaaaaattagtagaatcagggaagtcaaggcgttatcatttaattgatagattgattcg 375  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||| |||||| | ||||| ||  || | ||||| ||||||||||||||||||    
T  10413029 agtctttttaaaatataacaacattctttgagttgtgcaaaaaattagcagaatctgcgaagttaaaacgctgtcattaaattgatagattgattcg 10413125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 5381175 - 5381110
Alignment:
Q  391 cccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaagcaaag 456  Q
    ||||||||| ||||  || ||| |||||||||||||||||||||||||| |||||||||| |||||    
T  5381175 cccagtctcgacagcaacgacagagagagctttctcatcaatgaaaaatctcaagacaaaacaaag 5381110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 355 - 450
Target Start/End: Original strand, 18606260 - 18606355
Alignment:
Q  355 tttaattgatagattgattcgccttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |  ||||||| || ||||||||||||||||||||||| ||||||||||    
T  18606260 tttaattgatagattgattcaccttgttttgacactcccagtctccataacgacaacagagcgagctttctcatcaatgaaaaatctcaagacaaa 18606355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 406 - 456
Target Start/End: Original strand, 2812313 - 2812363
Alignment:
Q  406 gacaacatagagagctttctcatcaatgaaaaatatcaagacaaagcaaag 456  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||||    
T  2812313 gacaacagagagagctttctcatcaatgaaaaatctcaagacaaaacaaag 2812363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 35734258 - 35734185
Alignment:
Q  377 cttgttttgacactcccagtctccacagtgacaacatagagagctttctcatcaatgaaaaatatcaagacaaa 450  Q
    |||||||||| |||| |||||||||||  ||||||| ||||| |||||||||||||||||||| ||||||||||    
T  35734258 cttgttttgatactcacagtctccacaacgacaacagagagaactttctcatcaatgaaaaatctcaagacaaa 35734185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 7493726 - 7493770
Alignment:
Q  412 atagagagctttctcatcaatgaaaaatatcaagacaaagcaaag 456  Q
    |||||||||||||| ||||||||||||| |||||||||| |||||    
T  7493726 atagagagctttctgatcaatgaaaaatctcaagacaaaacaaag 7493770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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