View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16666_high_8 (Length: 382)
Name: NF16666_high_8
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 9970958 - 9970604
Alignment:
| Q |
13 |
gagaccaaattgcagctgagacagatgcaactacgaaaaaa-tattgatgcctaactgatggagacctaggaggcccagtaggccctaatggaacaaaga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9970958 |
gagaccaaattgcagctgagacagatgcaactacgaaaaaaatattgatgcctaactgatggagacctaggaggcccagtaggccctaatggaacaaaga |
9970859 |
T |
|
| Q |
112 |
atgaataagcactaaatgacttatgagcgatgacttttcttaattattttaaccatgtctgaatatccgattgaagagttacgtgatgtgtttgaaagct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9970858 |
atgaataagcactaaatgacttatgagcgatgacttttcttaattattttaaccatgtctgaatatccgattgaagagttacgtgatgtgtttgaaagct |
9970759 |
T |
|
| Q |
212 |
aacagaattatttattagtcgtatttgcaggtttagactaatttggcttctattatagtgaaaactgggctgggcttgaagttgaatagaaattaacgaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9970758 |
aacagaattatttattagtcgtatttgcaggtttagactaatttggcttctattattgtgaaaactgggctgggcttgaagttgaatagaaattaacgaa |
9970659 |
T |
|
| Q |
312 |
tttcttgtagtttagactaatttttcttaaactacttgtattgggccttggtttt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9970658 |
tttcttgtagtttagactaatttttcttaaactacttgtattgggccttggtttt |
9970604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University