View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_10 (Length: 370)
Name: NF16666_low_10
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 38322550 - 38322905
Alignment:
| Q |
15 |
atgaagtacagagtggtggatgaaatagctagagctaataactgcctccaacaaaatgtgttagccataaagtacaaccctgattggcaaaaagtgcagg |
114 |
Q |
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| T |
38322550 |
atgaagtacagagtggtggatgaaatagctagagctaataactgcctccaacaaaatgtgttagccataaagtacaaccctgattggcaaaaagtgcagg |
38322649 |
T |
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| Q |
115 |
ttcatttttctatactaaatggtcaatgtaatcatatttatgaacttatgatcttattaattaatagtagcaaataatgttgaatgtatttgtgcagctg |
214 |
Q |
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| T |
38322650 |
ttcatttttctatactatatggtcaatgtaatcatatttatgaacttatgatcttattaattaatagtagcaaataatgttgaatgtatttgtgcagctg |
38322749 |
T |
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| Q |
215 |
aaagaaaacaaaggatatcgacttgtcgaaagtgatgctcaaataaatgcctcaatttcagaatctaaagtccatccttcagagattgaagtgatagaaa |
314 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38322750 |
aaagaaaacaaaggatatcgacttgtcgaaagtaatgctcaaataaatgcctcaatttcagaatctaaagtccatccttcagagattgaagtgatagaaa |
38322849 |
T |
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| Q |
315 |
gagtttctaaaccatgtgaatcttgtgataatctttccaaatcaagcatcgatgat |
370 |
Q |
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| T |
38322850 |
gagtttctaaaccatgtgaatcttgtgataatctttccaaatcaagcatcgatgat |
38322905 |
T |
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