View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_12 (Length: 353)
Name: NF16666_low_12
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 15969047 - 15969364
Alignment:
| Q |
19 |
tcccttcacacaacattctgaatctacatgtcgttttgggtcccacccttccccttccccagtccccacccagatcccaatgttagcagaagataccttg |
118 |
Q |
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| T |
15969047 |
tcccttcatacaacattctgaatctacatgtcgttttgggtcccacccttccccttccccagtccccacccagatcccaatgttagcagaagataccttg |
15969146 |
T |
|
| Q |
119 |
taattccgcaagaacttttcgctttccattttgattaattaattcaaattcaattacagatccaaatcaaagtcaactttgtcttctacaatctcattcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15969147 |
taattccgcaagaacttttcgctttccattttgattaattaattcaaattcaattacagatccaaatcaaagtcaactttgtcttctgcaatctcattcc |
15969246 |
T |
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| Q |
219 |
atctccaggtacacattaatcaaccatgtttagtttcataacatatctatatttctccattttgcaaattctcttgtatttttatgagcacgtactcgga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15969247 |
atctccaggtacacattaatcaaccatgtttagtttcataacatatctatatttctccattttgcaaattctcttgtatttttatgagcacatactcgga |
15969346 |
T |
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| Q |
319 |
cacgtcgacactgataat |
336 |
Q |
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|||||||||||||||||| |
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| T |
15969347 |
cacgtcgacactgataat |
15969364 |
T |
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