View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_14 (Length: 338)
Name: NF16666_low_14
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 1158417 - 1158162
Alignment:
| Q |
19 |
atttactctctctttaatcttatttttattttaattttaagaaggttaatactacctagatgatttgttttcttctctataacctaattaccaaaaacaa |
118 |
Q |
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| T |
1158417 |
atttactctctctttaatcttatttttattttatttttaagaaggttaagcccacctagatgatttgttttcttctctataacctaattaccaaaaacaa |
1158318 |
T |
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| Q |
119 |
catttatcaat------gatgggtgagcaaccacattagtttctctcttgaaaaactcaacatgagagttgttacaactaaacttaactagagattaaca |
212 |
Q |
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| T |
1158317 |
catttattaatattaatgatgaaagagcaacctcgttaacttctctctttgaaaactcaacatgagagttgttacaactaaacttaactagagattgaca |
1158218 |
T |
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| Q |
213 |
tttcctagtatgataaaaccaaatttagaaacattattattatttattggaggcatca |
270 |
Q |
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| T |
1158217 |
tttccta--atgataaaaccaaattcagaaacattattattatttattggaggcatca |
1158162 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 35425453 - 35425406
Alignment:
| Q |
145 |
acattagtttctctcttgaaaaactcaacatgagagttgttacaacta |
192 |
Q |
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| T |
35425453 |
acattagcttctctcttgaaaaattcaacatgagagtttttacaacta |
35425406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 6955084 - 6955137
Alignment:
| Q |
136 |
tgagcaaccacattagtttctctcttgaaaaactcaacatgagagttgttacaa |
189 |
Q |
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| T |
6955084 |
tgagcaaccatattagtctctctcttagaaaactcgacataagagttgttacaa |
6955137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 51153739 - 51153783
Alignment:
| Q |
164 |
aaaactcaacatgagagttgttacaactaaact-taactagagat |
207 |
Q |
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| T |
51153739 |
aaaactcaacattagagttcttacaactaaactctaactagagat |
51153783 |
T |
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