View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16666_low_15 (Length: 317)

Name: NF16666_low_15
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16666_low_15
NF16666_low_15
[»] chr2 (12 HSPs)
chr2 (7-304)||(43900418-43900715)
chr2 (15-220)||(30906057-30906262)
chr2 (96-273)||(1400727-1400903)
chr2 (15-219)||(45305865-45306068)
chr2 (117-272)||(33667316-33667470)
chr2 (107-269)||(28527280-28527441)
chr2 (68-200)||(7378495-7378625)
chr2 (28-133)||(1400680-1400785)
chr2 (68-133)||(28527269-28527334)
chr2 (30-127)||(41212411-41212507)
chr2 (30-133)||(33667413-33667516)
chr2 (153-207)||(34175155-34175209)
[»] chr7 (27 HSPs)
chr7 (14-217)||(20556663-20556866)
chr7 (15-231)||(31303351-31303567)
chr7 (14-231)||(18312724-18312940)
chr7 (57-273)||(21548393-21548608)
chr7 (84-273)||(21589590-21589779)
chr7 (79-231)||(4290789-4290940)
chr7 (67-233)||(22740652-22740818)
chr7 (63-220)||(5083798-5083954)
chr7 (15-207)||(32964651-32964852)
chr7 (57-272)||(15958267-15958483)
chr7 (126-220)||(28804996-28805089)
chr7 (31-133)||(21589721-21589823)
chr7 (14-119)||(28805130-28805235)
chr7 (22-131)||(31303553-31303661)
chr7 (130-207)||(46943761-46943839)
chr7 (28-113)||(28804893-28804978)
chr7 (123-165)||(2887188-2887230)
chr7 (28-134)||(32964848-32964954)
chr7 (68-133)||(15958259-15958324)
chr7 (68-133)||(21548550-21548615)
chr7 (68-133)||(22033158-22033223)
chr7 (57-133)||(18312924-18313000)
chr7 (130-217)||(27523496-27523583)
chr7 (161-229)||(5174910-5174978)
chr7 (14-115)||(5174792-5174893)
chr7 (72-133)||(20556867-20556928)
chr7 (36-113)||(22032980-22033056)
[»] chr8 (25 HSPs)
chr8 (14-230)||(38606824-38607040)
chr8 (14-231)||(1251472-1251688)
chr8 (60-205)||(29367076-29367221)
chr8 (14-231)||(31273557-31273774)
chr8 (60-231)||(5321957-5322128)
chr8 (63-233)||(5573726-5573895)
chr8 (74-231)||(15714690-15714847)
chr8 (85-220)||(1240907-1241041)
chr8 (68-216)||(26493347-26493492)
chr8 (15-217)||(31596693-31596894)
chr8 (14-163)||(33286114-33286263)
chr8 (16-105)||(24576181-24576270)
chr8 (126-220)||(6809804-6809899)
chr8 (130-207)||(15233241-15233318)
chr8 (79-192)||(32959522-32959635)
chr8 (28-131)||(38606734-38606837)
chr8 (171-220)||(24575913-24575962)
chr8 (16-114)||(28700039-28700136)
chr8 (142-207)||(28700175-28700240)
chr8 (84-133)||(40502387-40502436)
chr8 (26-133)||(15714599-15714706)
chr8 (129-216)||(24537992-24538078)
chr8 (79-133)||(24575864-24575918)
chr8 (170-220)||(26914697-26914747)
chr8 (84-133)||(40502175-40502224)
[»] chr4 (29 HSPs)
chr4 (17-220)||(16583496-16583699)
chr4 (14-217)||(9808971-9809174)
chr4 (14-205)||(9810657-9810848)
chr4 (15-210)||(33179775-33179970)
chr4 (57-208)||(55666844-55666993)
chr4 (68-220)||(35544426-35544577)
chr4 (108-273)||(1966787-1966950)
chr4 (15-218)||(17633349-17633552)
chr4 (17-230)||(19596680-19596895)
chr4 (15-216)||(8740801-8741002)
chr4 (67-220)||(42908519-42908671)
chr4 (98-217)||(2433693-2433811)
chr4 (58-272)||(14351005-14351217)
chr4 (110-208)||(33249634-33249732)
chr4 (130-207)||(24669197-24669274)
chr4 (96-164)||(20874812-20874880)
chr4 (28-130)||(1966741-1966841)
chr4 (57-134)||(24669270-24669347)
chr4 (14-105)||(19746943-19747034)
chr4 (14-105)||(19792772-19792863)
chr4 (16-103)||(25007625-25007711)
chr4 (36-113)||(9810881-9810958)
chr4 (28-133)||(14351160-14351265)
chr4 (28-113)||(19596901-19596986)
chr4 (108-146)||(1966978-1967016)
chr4 (36-113)||(9809194-9809271)
chr4 (68-113)||(17633288-17633333)
chr4 (15-100)||(20871742-20871827)
chr4 (57-113)||(42908685-42908741)
[»] chr3 (42 HSPs)
chr3 (53-220)||(42637962-42638129)
chr3 (14-231)||(3785859-3786076)
chr3 (14-231)||(3823548-3823766)
chr3 (84-273)||(26308593-26308782)
chr3 (14-220)||(44080153-44080359)
chr3 (15-220)||(4169111-4169305)
chr3 (14-211)||(9710739-9710930)
chr3 (14-216)||(1705680-1705880)
chr3 (15-208)||(19280098-19280288)
chr3 (74-211)||(5341833-5341970)
chr3 (68-218)||(19624257-19624406)
chr3 (18-183)||(11509804-11509969)
chr3 (107-220)||(31545606-31545719)
chr3 (130-207)||(27335402-27335479)
chr3 (122-219)||(42481305-42481402)
chr3 (14-220)||(22432234-22432433)
chr3 (84-220)||(27707641-27707776)
chr3 (109-217)||(13358101-13358208)
chr3 (53-209)||(34627316-34627468)
chr3 (57-185)||(23163268-23163397)
chr3 (67-220)||(27079302-27079454)
chr3 (67-220)||(27085099-27085251)
chr3 (130-207)||(27326047-27326124)
chr3 (130-207)||(27332284-27332361)
chr3 (130-207)||(27365008-27365085)
chr3 (37-133)||(31545714-31545810)
chr3 (156-208)||(11501309-11501361)
chr3 (57-115)||(13358992-13359050)
chr3 (142-208)||(39126189-39126254)
chr3 (84-178)||(41571810-41571904)
chr3 (14-77)||(31545423-31545486)
chr3 (28-130)||(19280298-19280400)
chr3 (148-198)||(23163787-23163837)
chr3 (68-130)||(26308586-26308648)
chr3 (57-130)||(1705605-1705678)
chr3 (84-133)||(22432428-22432477)
chr3 (14-130)||(27040683-27040799)
chr3 (172-231)||(11509989-11510048)
chr3 (28-110)||(18733595-18733677)
chr3 (170-216)||(55165098-55165144)
chr3 (170-207)||(18733539-18733576)
chr3 (68-120)||(5341987-5342039)
[»] chr6 (29 HSPs)
chr6 (61-273)||(10304654-10304865)
chr6 (17-216)||(3222332-3222530)
chr6 (79-217)||(33815025-33815163)
chr6 (15-231)||(22608259-22608474)
chr6 (18-216)||(23595055-23595243)
chr6 (122-272)||(138669-138819)
chr6 (122-272)||(146690-146840)
chr6 (15-272)||(3620714-3620970)
chr6 (122-272)||(9068411-9068560)
chr6 (129-220)||(2834974-2835065)
chr6 (14-155)||(11108147-11108288)
chr6 (28-206)||(9474545-9474718)
chr6 (170-220)||(2430613-2430663)
chr6 (16-133)||(7706758-7706876)
chr6 (28-133)||(2835060-2835165)
chr6 (30-105)||(24386337-24386412)
chr6 (28-133)||(2430513-2430618)
chr6 (37-133)||(9068503-9068599)
chr6 (79-133)||(2430650-2430704)
chr6 (170-220)||(7706863-7706913)
chr6 (53-119)||(9068329-9068394)
chr6 (84-133)||(15341858-15341907)
chr6 (53-133)||(138646-138726)
chr6 (53-133)||(146667-146747)
chr6 (57-105)||(10304636-10304684)
chr6 (30-105)||(20084589-20084664)
chr6 (26-128)||(7915696-7915798)
chr6 (68-113)||(30056072-30056117)
chr6 (68-112)||(11108116-11108160)
[»] chr1 (27 HSPs)
chr1 (22-217)||(34490094-34490287)
chr1 (15-219)||(34364131-34364333)
chr1 (109-220)||(29677091-29677202)
chr1 (91-271)||(42604192-42604372)
chr1 (79-216)||(25238439-25238575)
chr1 (92-273)||(29167764-29167943)
chr1 (15-270)||(5831431-5831685)
chr1 (72-207)||(9468064-9468199)
chr1 (57-220)||(38951844-38952010)
chr1 (18-206)||(517433-517623)
chr1 (130-206)||(2996025-2996101)
chr1 (15-207)||(5855005-5855205)
chr1 (28-133)||(13350894-13350999)
chr1 (28-130)||(34490289-34490391)
chr1 (170-231)||(2569961-2570022)
chr1 (68-168)||(9929836-9929935)
chr1 (179-272)||(9929685-9929778)
chr1 (84-131)||(38244801-38244848)
chr1 (68-130)||(5831633-5831695)
chr1 (68-130)||(29167757-29167818)
chr1 (68-133)||(29677032-29677096)
chr1 (52-134)||(5855201-5855283)
chr1 (84-133)||(24708074-24708123)
chr1 (68-133)||(38952005-38952070)
chr1 (57-133)||(2570006-2570082)
chr1 (84-132)||(17227500-17227548)
chr1 (37-113)||(28499644-28499720)
[»] chr5 (23 HSPs)
chr5 (16-273)||(13312498-13312754)
chr5 (21-219)||(22169361-22169559)
chr5 (14-220)||(43461707-43461912)
chr5 (16-218)||(33958988-33959189)
chr5 (14-220)||(31189473-31189680)
chr5 (107-220)||(35922722-35922835)
chr5 (79-216)||(38521978-38522114)
chr5 (132-265)||(42034771-42034904)
chr5 (14-165)||(36169394-36169544)
chr5 (68-231)||(19621468-19621630)
chr5 (15-204)||(43262708-43262911)
chr5 (37-207)||(7156000-7156182)
chr5 (130-207)||(30704398-30704476)
chr5 (68-133)||(15221662-15221727)
chr5 (154-209)||(30045885-30045940)
chr5 (171-273)||(15221618-15221720)
chr5 (16-113)||(35922607-35922704)
chr5 (28-133)||(13312696-13312797)
chr5 (165-220)||(2477302-2477357)
chr5 (68-133)||(35922830-35922895)
chr5 (86-134)||(7156178-7156226)
chr5 (28-133)||(33958887-33958991)
chr5 (57-105)||(15221576-15221624)
[»] scaffold1126 (1 HSPs)
scaffold1126 (14-273)||(162-421)
[»] scaffold0251 (1 HSPs)
scaffold0251 (16-219)||(10622-10825)
[»] scaffold0123 (1 HSPs)
scaffold0123 (93-216)||(24031-24153)
[»] scaffold0126 (1 HSPs)
scaffold0126 (14-157)||(21549-21690)
[»] scaffold0043 (2 HSPs)
scaffold0043 (130-207)||(87035-87112)
scaffold0043 (15-133)||(86873-86991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (130-207)||(112158-112235)
[»] scaffold0291 (1 HSPs)
scaffold0291 (130-207)||(5870-5947)
[»] scaffold0213 (2 HSPs)
scaffold0213 (69-132)||(24932-24995)
scaffold0213 (67-133)||(25350-25416)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 43900418 - 43900715
Alignment:
Q  7 ggagcagagaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaa 106  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||     
T  43900418 ggagcaaagaataaagattgatagacacttttaatgtgtagatcattttgtaccactctcgaaaatttcaggtaactaaatatatggtctgtgtgatcac 43900517  T
Q  107 attttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43900518 attttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttctatttagttaaccaaataaa 43900617  T
Q  207 ttctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactggtacaggggtgtacacaataagggtgtctac 304  Q
    ||||| |||||||||| ||||||||||       |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43900618 ttctgaaaaaataggggtcacgcaattaaaaaaatgtgatcacacaaatcatatatttggttaactgatacaggggtgtacacaataagggtgtctac 43900715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 30906262 - 30906057
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||| | || ||||| |||||||||| | | |||| |||||||||  |||||||||| |||| |||||||||||||| |||||||   ||||||    
T  30906262 gaataaagatgggtacacacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttc 30906163  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    ||||   ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||    
T  30906162 agtttcgtgaccactatttaaatgctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaagcaaataaattatggaa 30906063  T
Q  215 aaatag 220  Q
    | ||||    
T  30906062 acatag 30906057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 96 - 273
Target Start/End: Complemental strand, 1400903 - 1400727
Alignment:
Q  96 tgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagtt 195  Q
    |||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||| ||||||    
T  1400903 tgtgtgaccacattttt-cagttgcgtgaccactatttagaagctgaaaaatgtggtcacacaacaaaaatgcgcgtgatcactatttttccacttagtt 1400805  T
Q  196 aaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    ||||||||||||| ||||||||||| | |||||||| |       |||| ||||||| ||||||||||||||||||||    
T  1400804 aaccaaataaattatggaaaaatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactg 1400727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 45305865 - 45306068
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||| |||  ||||||||||| |||| |    ||| |||||||||  |||||||||| |||  |||||||| |||||| |||||| ||||||||    
T  45305865 gaataaagatagatttacacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatatagtctgtatgaccatattttttc 45305964  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    |||||  ||||||| ||||| |||||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||||||| ||||||||||  ||    
T  45305965 agttgcgtgaccac-atttaaaagctgaaaaatgtggccacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccgaataaattctaaaa 45306063  T
Q  215 aaata 219  Q
    |||||    
T  45306064 aaata 45306068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 117 - 272
Target Start/End: Original strand, 33667316 - 33667470
Alignment:
Q  117 ttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    |||||||||||| ||||||||| |||||||||||||||||||| |||||||  ||| ||||||||||||||| ||||||||||||||| |||||| ||||    
T  33667316 ttgtatgaccac-atttagaagttgaaaaatgtggtcacgcaattaaaatgtgcgtaaccactatttttccacttagttaaccaaatatattctgaaaaa 33667414  T
Q  217 atagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaact 272  Q
    |||| | |||||||| |       |||| ||| ||| |||||||||||||||||||    
T  33667415 atagtggtcacgcaacttaaaaaatgtgttcatacataccatatatttggttaact 33667470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 269
Target Start/End: Complemental strand, 28527441 - 28527280
Alignment:
Q  107 attttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    ||||||| |||||  ||||||  |||||||||||| ||||||| |||||| |||||| ||||  |||||||||||||||||| |||||||||||||||||    
T  28527441 atttttttagttgcgtgaccataatttagaagctggaaaatgttgtcacg-aactaacatgcgtgtgaccactatttttccaattagttaaccaaataaa 28527343  T
Q  207 ttctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggtta 269  Q
    |||||||||||||| | |||||||| |       |||| ||||||| ||||||||||||||||    
T  28527342 ttctggaaaaatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggtta 28527280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 200
Target Start/End: Complemental strand, 7378625 - 7378495
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatg 167  Q
    |||||||||| |||| ||||||||||| |||||||||| |||||||||||||  | ||||| ||||||||||| |||||| |||| ||||||||||||||    
T  7378625 aaaatttcagttaacaaaatatatggtttgtgtgaccatattttttcagttgcgtaaccac-atttagaagct-aaaaatatggtgacgcaactaaaatg 7378528  T
Q  168 cacgtgaccactatttttccatttagttaacca 200  Q
       |||||||||||| ||||| ||| |||||||    
T  7378527 tgtgtgaccactattattccacttaattaacca 7378495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 1400680 - 1400785
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    ||||||||||||||||||| | | |||| ||||| |||  |||||||||| |||| ||||||||||| |||||||||| ||||||| |||||  ||||||    
T  1400680 tagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgacca 1400779  T
Q  128 ctattt 133  Q
    ||||||    
T  1400780 ctattt 1400785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 28527269 - 28527334
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||| |||| |||||||||||||||||||||| ||||||| |||||  ||||||||||||    
T  28527269 aaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactattt 28527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 41212507 - 41212411
Alignment:
Q  30 gacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||||||||| |||| | |  ||| |||||||||  ||||||| || |||| |||||||||||||||||||||| ||||||| |||||| ||||||    
T  41212507 gacacccttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatatggtctgtgtgaccacatttttt-agttgtgtgacca 41212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 33667516 - 33667413
Alignment:
Q  30 gacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccact 129  Q
    |||||||||||| |||| |   |||| |||||||||  ||||||| || |||| ||||||||||| ||| ||| || ||||||| |||||  ||||||||    
T  33667516 gacacccttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccact 33667417  T
Q  130 attt 133  Q
    ||||    
T  33667416 attt 33667413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 34175155 - 34175209
Alignment:
Q  153 cacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||||||||||   |||||  ||||||||||| ||||||||||||||||||    
T  34175155 cacgcaactaaaatgtgtgtgactgctatttttccacttagttaaccaaataaat 34175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 20556663 - 20556866
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | ||||||||||||||||||| |||  ||| |   ||||||||||||||||| |||| |||||||||||| ||||||||| |||||||    
T  20556663 agaataaagatcggtagacacccttaatgtgtatatctctttgtgttactctcgaaaatttcagttaaccaaatatatggtcggtgtgaccatatttttt 20556762  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||| |    
T  20556763 cagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatacgcgtgaccaatatttttccacttagttaaccaaataaattctgaa 20556862  T
Q  214 aaaa 217  Q
    ||||    
T  20556863 aaaa 20556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 31303351 - 31303567
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||||| ||||||||||||||||||| |||  ||| || ||||||  ||||||||||  ||| ||||| |||||||| ||||||| ||||||||    
T  31303351 gaataaagattggtagacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttc 31303450  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    | |||  ||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||    
T  31303451 aattgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaa 31303550  T
Q  215 aaatagggatcacgcaa 231  Q
    | |||| | ||||||||    
T  31303551 acatagtggtcacgcaa 31303567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 18312724 - 18312940
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| ||||||||||||| ||||| | |  ||| ||||||||||||||||||||  |||  ||||||||||||| |||||||| || ||||    
T  18312724 agaataaagattggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatatggtctctgtgaccacatatttt 18312823  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  | || ||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||    
T  18312824 cagttgcgtcactactatttagaagctgaaaa-tgtgctcacgcaactaaaatgcatgtgaccactatttttccacttagttaacctaataaattcttga 18312922  T
Q  214 aaaatagggatcacgcaa 231  Q
    ||||||| | ||||||||    
T  18312923 aaaatagtggtcacgcaa 18312940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 57 - 273
Target Start/End: Original strand, 21548393 - 21548608
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacg 156  Q
    ||||||||| ||||||||||| |||  ||| ||||||| |||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  21548393 taccactcttgaaaatttcagttaatcaaa-atatggtatgtgtgaccatattttttcagttgtgtgaccaatatttaaaagctgaaaaatgtggtcacg 21548491  T
Q  157 caactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaacc 256  Q
    |||||  ||||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||| | |||||||| |       | |||||||||| |||    
T  21548492 caactcgaatgcgcgtaaccactgtttttccacttagttaaccaaataaattctggaaaaatagtggtcacgcaactaaacaaatatgatcacacagacc 21548591  T
Q  257 atatatttggttaactg 273  Q
    |||||||| ||||||||    
T  21548592 atatatttagttaactg 21548608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 84 - 273
Target Start/End: Original strand, 21589590 - 21589779
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactattt 183  Q
    |||||||| |||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  21589590 aaatatattgtctatgtgaccatattttttcagttgtgtgatcactatttagaagctgaaaaatgtggtcatgcaactaaaatgcgtgtgaccactattt 21589689  T
Q  184 ttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    ||||| ||| |||| ||||||| |||||||||||||| | ||| |||| |       |||| ||||||| ||||||||||||| ||||||    
T  21589690 ttccacttaattaatcaaataagttctggaaaaatagtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttggataactg 21589779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 4290789 - 4290940
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccac 178  Q
    |||||| ||||||||| | | |||||| |||||||||||||  ||||||||||||||||| |||||||||||||||||||||| || ||  |||||||||    
T  4290789 taactagatatatggtttatctgaccacattttttcagttgagtgaccactatttagaagttgaaaaatgtggtcacgcaact-aagtgtgcgtgaccac 4290887  T
Q  179 tatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    |||||||||| |||||||||||||||||||||| |||| ||| | ||||||||    
T  4290888 tatttttccacttagttaaccaaataaattctgaaaaactagtggtcacgcaa 4290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 22740818 - 22740652
Alignment:
Q  67 gaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt-cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaa 165  Q
    ||||||||||  ||||||||||||| || ||||| |||| ||||||| ||||||| |||||| |||||| |||||||||||| |||||||||||||||||    
T  22740818 gaaaatttcaattaactaaatatatagtttgtgtaaccacatttttttcagttgtgtgacca-tatttaaaagctgaaaaatatggtcacgcaactaaaa 22740720  T
Q  166 tgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaatt 233  Q
    |   ||||| || |||||||||| |||||||||||||||||||||| ||||||||   ||||||||||    
T  22740719 tatgcgtgatcattatttttccacttagttaaccaaataaattctgaaaaaatagtagtcacgcaatt 22740652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 5083954 - 5083798
Alignment:
Q  63 tctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaacta 162  Q
    ||||||||||||||  | |  ||||||||||| |||||||||| ||||||||| |||  ||||||||||||||||| |||||||| |||||||||||||     
T  5083954 tctcgaaaatttcaattcatcaaatatatggtatgtgtgaccacattttttcaattgcgtgaccactatttagaagttgaaaaatatggtcacgcaact- 5083856  T
Q  163 aaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    ||||||  |||||||||||||||| | || |||||| ||||||||||| |||||||||    
T  5083855 aaatgcgggtgaccactatttttcaactttgttaacgaaataaattctagaaaaatag 5083798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 32964651 - 32964852
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||||| |||||| |||||||||||| ||   |||| ||||||||  | ||||| || |||||||||||||||| |||||||||| |||||| |    
T  32964651 gaataaagattggtagacatccttaatgtgtacattcatttacaccactctaaagaatttaagttaactaaatatatggtatgtgtgaccatattttt-c 32964749  T
Q  115 agttgtatgaccactattt----------agaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaata 204  Q
    | |||| ||||||||||||          |||||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  32964750 aattgtgtgaccactattttccagcatttagaagctgaaaaatatggtcatgtaactaaaatgcacgtgaccactatttttccacttaattaacctaata 32964849  T
Q  205 aat 207  Q
    |||    
T  32964850 aat 32964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 15958483 - 15958267
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacg 156  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||||| | ||||| ||||| |||| |||||||||||||||||||||||||||||||    
T  15958483 taccactctgtaaaatttcagttaactaaatatatggtctgtgtgaccaca-tttttaagttgcatga-cactatttagaagctgaaaaatgtggtcacg 15958386  T
Q  157 caactaaaatgcacgtgaccac----tatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacaca 252  Q
    ||| | |||||  ||||| |||    | |||||  | ||| |||||||||||||||||| |||||||| | |||| ||| |       |||| ||||||     
T  15958385 caa-ttaaatgtgcgtgatcacaatttttttttttacttatttaaccaaataaattctgaaaaaatagtggtcacacaactaaaaaaatgtggtcacact 15958287  T
Q  253 aaccatatatttggttaact 272  Q
     |||||||||||||||||||    
T  15958286 gaccatatatttggttaact 15958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 220
Target Start/End: Complemental strand, 28805089 - 28804996
Alignment:
Q  126 cactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  28805089 cactatttagaagctgaaaaatgtggtcacacaaccaaaatgcgcg-gaccactatttttccacttagttaaccaaataaattatggaaatatag 28804996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 21589823 - 21589721
Alignment:
Q  31 acacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccacta 130  Q
    |||||||||||||||| |||  |||||||||||||  |||||||||| || | |||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  21589823 acacccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccacta 21589724  T
Q  131 ttt 133  Q
    |||    
T  21589723 ttt 21589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 28805235 - 28805130
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| ||||||||||||||||||| | |  ||| || ||||||  ||||||| || |||| ||||||||||| |||||||||| |||||||    
T  28805235 agaataaagattggtagacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt 28805136  T
Q  114 cagttg 119  Q
    ||||||    
T  28805135 cagttg 28805130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 31303661 - 31303553
Alignment:
Q  22 gattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgta 121  Q
    ||||| |||||||| ||||||| || ||| |||||||||||||   |||||||||| |||| ||||||||||| |||||||||| ||||||| |||||      
T  31303661 gattggtagacacctttaatgtctacatccttttataccactcaaaaaaatttcagttaacaaaatatatggtatgtgtgaccacatttttt-agttgcg 31303563  T
Q  122 tgaccactat 131  Q
    ||||||||||    
T  31303562 tgaccactat 31303553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 46943839 - 46943761
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactat--ttttccatttagttaaccaaataaat 207  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||||||  |||| || ||||||||||||||||||    
T  46943839 atttagaagctgaaaa-tgtgatcacgcaactaaaatgcgcgtgaccactattttttttcacttagttaaccaaataaat 46943761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 28804893 - 28804978
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||||||||| |||| | | |||| ||||| ||| ||||||||||| |||| ||||||||||||| |||||||| |||||||    
T  28804893 tagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacatttttt 28804978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 2887230 - 2887188
Alignment:
Q  123 gaccactatttagaagctgaaaaatgtggtcacgcaactaaaa 165  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  2887230 gaccactatttagaagctgaaaaatgtggttacgcaactaaaa 2887188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 32964954 - 32964848
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||||| ||||||| || | | |||| || ||||||  ||||||| || |||||| |||||||||||||||||||| || |||| |||||  ||||||    
T  32964954 tagacacctttaatgtatacacccttttgtatcactctaaaaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgacca 32964855  T
Q  128 ctattta 134  Q
    |||||||    
T  32964854 ctattta 32964848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 15958259 - 15958324
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    ||||||| || |||| |||||||||||| ||||||||| ||||||| |||||| ||||||||||||    
T  15958259 aaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattt 15958324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 21548615 - 21548550
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||| |||||||||||||||||||||||| || |||| || |||||  ||||||||||||    
T  21548615 aaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactattt 21548550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 22033223 - 22033158
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    ||||||| || |||| |||||||||||||||||||||| ||||||| |||||  ||||||||||||    
T  22033223 aaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactattt 22033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 18313000 - 18312924
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||  |||||||||| |||| ||||||||||| |||||| | ||||||||| |||||  ||||||||||||    
T  18313000 taccactctgaaaaatttcagctaaccaaatatatggtttgtgtggctaaatttttttagttgcgtgaccactattt 18312924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 27523583 - 27523496
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaa 217  Q
    |||||||| ||||||||  ||||||  ||| |||||||  | |||| |||||||||||| ||| |||||||||||||||||| |||||    
T  27523583 atttagaaactgaaaaacatggtcatacaattaaaatgtgcttgactactatttttccacttaattaaccaaataaattctgaaaaaa 27523496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 5174910 - 5174978
Alignment:
Q  161 taaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgc 229  Q
    |||||||  |||||||||||||||| || |||||||| ||||||||||||| |||| ||| | ||||||    
T  5174910 taaaatgtgcgtgaccactatttttacacttagttaatcaaataaattctgaaaaattagtggtcacgc 5174978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 5174792 - 5174893
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||||||  ||| |||  ||||||||||| |||  ||| |||||| |||||||||||||| |||  | ||||||||| ||||| | || |||||||    
T  5174792 agaataaagatcaataaacattcttaatgtgtacatctctttgtaccacgctcgaaaatttcagttaatcatatatatggtttgtgtaatcacatttttt 5174891  T
Q  114 ca 115  Q
    ||    
T  5174892 ca 5174893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 20556928 - 20556867
Alignment:
Q  72 tttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||| ||||||||||||| |||||| |||||| |||||||  ||||  ||||||||||||    
T  20556928 tttcagttaactaaatatatagtctgtttgaccacatttttttggttgagtgaccactattt 20556867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 22032980 - 22033056
Alignment:
Q  36 cttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| ||| |||  |||||||||  ||||||| || |||| ||||||||||| |||||||||| |||||||    
T  22032980 cttaatgtgtacatcctttg-taccactctttaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt 22033056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 38607040 - 38606824
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||| |||| |||||| |||||||||||| | |  ||| ||| |||||| |||||||||| |||||| ||||||||| || ||||||| |||||||    
T  38607040 agaataaatattggtagacatccttaatgtgtacacccctttgtacaactctccaaaatttcagttaactacatatatggtttgcgtgaccacatttttt 38606941  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  | ||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  38606940 cagttgcgttaccactatttagaagctgaaaaatgtggtcacgcaacgaaaatgcgtgtgaccactatttttccacttagttaaccaaataaattctgga 38606841  T
Q  214 aaaatagggatcacgca 230  Q
    || |||| | |||||||    
T  38606840 aacatagtggtcacgca 38606824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 1251688 - 1251472
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| |||||| |||||||||||| | |  ||| ||||||||||||||||||||| |||||||||||||| | |||| ||||| |||||||    
T  1251688 agaataaagattggtagacatccttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacatttttt 1251589  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  ||||||||||||| || |||||||||||| ||| | ||||||||||  || |||||||||||| ||| ||||||||||||||||||| ||||    
T  1251588 cagttgcgtgaccactatttaaaacctgaaaaatgtgatcatg-aactaaaatgtgcgcgaccactattttcccacttagttaaccaaataaattatgga 1251490  T
Q  214 aaaatagggatcacgcaa 231  Q
    ||||||| | ||||||||    
T  1251489 aaaatagtggtcacgcaa 1251472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 29367221 - 29367076
Alignment:
Q  60 cactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaa 159  Q
    |||||| |||||||| |  |||||||||||||||||| ||| |||| ||||||||| |||| |||||||||||| |||||||||||||||||||||||||    
T  29367221 cactcttgaaaattttaattaactaaatatatggtctatgtaaccatattttttcaattgtgtgaccactattttgaagctgaaaaatgtggtcacgcaa 29367122  T
Q  160 ctaaaatgcacgtgaccactatttttccatttagttaaccaaataa 205  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  29367121 ctaaaatgcgcgtgaccactatttttccacttagttaaccaaataa 29367076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 31273774 - 31273557
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| |||| || ||||||||||| | | |||| ||||||||||||||||||||  |||  ||||||||||||| |||| ||| || ||||    
T  31273774 agaataaagattggtagatactcttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatatggtctatgtggccacatgtttt 31273675  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  ||||| |||||||||||||||||||| |||||| ||| ||||||||||||||| | |||||||| || | |||||||||||||||||||  |    
T  31273674 cagttgcgtgacccctatttagaagctgaaaaatatggtcatgcagctaaaatgcacgtgaacgctattttttcactaagttaaccaaataaattcttaa 31273575  T
Q  214 aaaatagggatcacgcaa 231  Q
    ||||| | ||||||||||    
T  31273574 aaaatggtgatcacgcaa 31273557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 5322128 - 5321957
Alignment:
Q  60 cactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaa 159  Q
    ||||||| |||||||||  |||| ||||||||||||||||||| || ||||||||| |||  ||| || ||||||||||||||||||| || ||||||||    
T  5322128 cactctcaaaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattatttagaagctgaaaaatatgatcacgcaa 5322029  T
Q  160 ctaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||||| | ||||||||    
T  5322028 ctaaaatgcgcgtgaccactatttttccacttagttaaccaaataaattctaaaaaaatagtggtcacgcaa 5321957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 63 - 233
Target Start/End: Original strand, 5573726 - 5573895
Alignment:
Q  63 tctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaacta 162  Q
    ||||||| ||||||| |||| ||||||||| | | |||||| | ||||||||| |||  ||||||||||||||||| ||||||||||||||| | |||||    
T  5573726 tctcgaacatttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgaccactatttagaagttgaaaaatgtggtcatggaacta 5573825  T
Q  163 aaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaatt 233  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| | ||||||||||    
T  5573826 aaatgcacgtgaccactatttttccacttagttaaccaaataaatt-ttgaaaaatagtggtcacgcaatt 5573895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 15714847 - 15714690
Alignment:
Q  74 tcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtg 173  Q
    |||| |||||||||||||||||||||| |||| |||||||||| ||| |||| |||||||| |||||||||||| |||||||| ||||||||||  ||||    
T  15714847 tcagttaactaaatatatggtctgtgtaaccacattttttcagctgtgtgactactatttaaaagctgaaaaatatggtcacgtaactaaaatgtccgtg 15714748  T
Q  174 accactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    ||||||||||||||| |||||||||||||||||||  | |||||||| | ||||||||    
T  15714747 accactatttttccacttagttaaccaaataaatttcgaaaaaatagtggtcacgcaa 15714690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 85 - 220
Target Start/End: Complemental strand, 1241041 - 1240907
Alignment:
Q  85 aatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttt 184  Q
    |||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||  |||||||||||||||    
T  1241041 aatatatggtgtgtgagaccatattttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgcgtgaccactatttt 1240943  T
Q  185 tccatttagttaaccaaataaattctggaaaaatag 220  Q
     ||| ||||||||||||||||||| |||||||||||    
T  1240942 cccacttagttaaccaaataaattatggaaaaatag 1240907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 26493492 - 26493347
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatg 167  Q
    |||||||||  |||| ||||||||  | ||||||| || |||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||    
T  26493492 aaaatttcaattaaccaaatatat--tttgtgtgatcacattttttcagttgtgtaactactatttagaagctgaaaaatgtggtcacgcaact-aaatg 26493396  T
Q  168 cacgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    | |||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  26493395 cgcgtgacaactatttttccatttagttaatcaaataaattctgaaaaa 26493347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 31596693 - 31596894
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||||| ||||||| |||||| |||| | |  ||| ||||||| |  |||||| ||| |||  ||||||||||| |||||||||| ||||||||    
T  31596693 gaataaagattggtagacactcttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccacattttttc 31596792  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    |||||  | ||||||||||||||| |||||||||||||||  ||||| ||||||  || | ||||||||||||| ||| ||||||||||||||| |||||    
T  31596793 agttgcgttaccactatttagaagatgaaaaatgtggtcagacaact-aaatgcgtgtaatcactatttttccacttaattaaccaaataaattatggaa 31596891  T
Q  215 aaa 217  Q
    |||    
T  31596892 aaa 31596894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 33286114 - 33286263
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| | ||||||||||||||||| | |  ||| |||| ||||  |||| || |  |||| |||||||||||||| ||||||| |||||||    
T  33286114 agaataaagattggtggacacccttaatgtgtacacccatttgtacccctctaaaaaaatttaattaaccaaatatatggtctgcgtgaccacatttttt 33286213  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaa 163  Q
    || |||  |||||||| |||||||||||||||||||||||||||||||||    
T  33286214 caattgcgtgaccactttttagaagctgaaaaatgtggtcacgcaactaa 33286263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 24576270 - 24576181
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    ||||||||||| ||||||||| ||||||||| | |  ||| ||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  24576270 aataaagattggtagacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtctgtgtgacca 24576181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 6809804 - 6809899
Alignment:
Q  126 cactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctg-gaaaaatag 220  Q
    ||||||||| ||| | ||||||||||| || | |||||||| || |||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  6809804 cactatttaaaagataaaaaatgtggttactcgactaaaatacatgtgaccactatttttccatttaattaaccaaataaattatgagaaaaatag 6809899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 15233241 - 15233318
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    ||||| ||| ||||||| ||||||||||||||||||||| | |||||||||||||| || ||| ||||||||||||||    
T  15233241 atttaaaagttgaaaaacgtggtcacgcaactaaaatgcgcatgaccactattttttcacttaattaaccaaataaat 15233318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 32959522 - 32959635
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccac 178  Q
    |||| ||||| ||| | ||||||| || ||||||||| ||   ||||||| ||| ||||||| |||||| ||||||| |||||||||||   ||||||||    
T  32959522 taaccaaatacatgatttgtgtgatcacattttttcaattacgtgaccaccattaagaagctaaaaaatatggtcacacaactaaaatgtgtgtgaccac 32959621  T
Q  179 tatttttccattta 192  Q
    ||||||||||||||    
T  32959622 tatttttccattta 32959635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 38606734 - 38606837
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||| ||||||| | |||| |  ||| |||||||||  |||||||||| |||||||||||||||| |||||||||| ||||||| || ||  ||||||    
T  38606734 tagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatatggtatgtgtgaccatatttttttagctgcgtgacca 38606833  T
Q  128 ctat 131  Q
    ||||    
T  38606834 ctat 38606837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 24575962 - 24575913
Alignment:
Q  171 gtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  24575962 gtgaccactattttttcacttatttaaccaaataaattctggaaaaatag 24575913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 28700039 - 28700136
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    ||||||||| | | |||| | |||||||||| |||||||| || || |||  |||||||||| |||||||||||||||| | |||||||| ||||||||    
T  28700039 aataaagataggttgacatctttaatgtgtacatcattttgtatcattctaaaaaatttcagttaactaaatatatggt-tatgtgaccatattttttc 28700136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 28700175 - 28700240
Alignment:
Q  142 aaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    ||||||| | |||| ||| ||||||||| ||||||| |||||||| | ||||||||||||||||||    
T  28700175 aaaaatgcgatcacacaattaaaatgcaagtgaccattatttttctacttagttaaccaaataaat 28700240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 40502436 - 40502387
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||||||||||| ||||||| || ||| ||||||||||||    
T  40502436 aaatatatggtctgtgtgaccacattttttaaggtgtgtgaccactattt 40502387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 15714599 - 15714706
Alignment:
Q  26 gatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgac 125  Q
    |||||||||| ||||| |||| |   |||| |||||||||  |||||||||| || ||||||||||| | | |||||||| ||||| | |||||  ||||    
T  15714599 gatagacacctttaatatgtacacatttttgtaccactctgaaaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgac 15714698  T
Q  126 cactattt 133  Q
    ||||||||    
T  15714699 cactattt 15714706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 24538078 - 24537992
Alignment:
Q  129 tatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    |||||||||||| |||||| |||||| | ||||  || ||  || |||||||||||||||| | |||||||||||||||| |||||||    
T  24538078 tatttagaagct-aaaaatatggtcatgtaactgcaacgcgtgttaccactatttttccatatggttaaccaaataaattttggaaaa 24537992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 24575864 - 24575918
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||| |||||||||||||||| ||||| ||| ||| |||||| ||||||||||||    
T  24575864 taaccaaatatatggtctgtgcgaccatattattttagttgtctgaccactattt 24575918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 26914747 - 26914697
Alignment:
Q  170 cgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||||||| |||||||||| | | ||||||||||||||||| |||||||||    
T  26914747 cgtgaccattatttttccactcaattaaccaaataaattcttgaaaaatag 26914697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 40502224 - 40502175
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||||||||||| ||||||| || ||  ||||||||||||    
T  40502224 aaatatatggtctgtgtgaccacattttttaaggtgcgtgaccactattt 40502175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 16583496 - 16583699
Alignment:
Q  17 ataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcag 116  Q
    |||||||||| ||||||||||||||| ||| |||  ||| ||||||||||||||||||||| |||| |||||||||||   |||||||| ||||||||||    
T  16583496 ataaagattggtagacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcag 16583595  T
Q  117 ttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    |||  |||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||| |||    
T  16583596 ttgcgtgaccactatttagaagctgaaaaatatgatcatgcaactaaaatgcgcgtgaccactatttttccacttaattaaccaaataaattatggtaaa 16583695  T
Q  217 atag 220  Q
    ||||    
T  16583696 atag 16583699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 9808971 - 9809174
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | | |||||||||||| |||| | | |||| |||| || |  |||| ||||| ||||||||||||||||||| ||||||| |||||||    
T  9808971 agaataaagataggttgacacccttaatatgtacacccttttgtaccgctatgaaaaaattcagttaactaaatatatggtctgcgtgaccacatttttt 9809070  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  |||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| || ||||    
T  9809071 cagttgcgtgaccactatttagaagctgaaaaatgtagtcacgcaactcaaatgcgcgtgaccactatttttccatttagttaaccaaataatttatgga 9809170  T
Q  214 aaaa 217  Q
    ||||    
T  9809171 aaaa 9809174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 9810657 - 9810848
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | | |||||||||||| |||| | | |||| ||||||| |  |||||||||| ||| |||||||||||| || || |||| |||||||    
T  9810657 agaataaagataggttgacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatatggtttgcgttaccacatttttt 9810756  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataa 205  Q
    ||||||  ||||||||||||||||||| |||||||| ||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||    
T  9810757 cagttgcgtgaccactatttagaagctaaaaaatgtagtcacgcaactcaaatgtgcgtgacctctatttttccatttagttaaccaaataa 9810848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 33179970 - 33179775
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||| ||||| |||||| |||||||||||| ||   ||||||||||| |||||||||| |  |||||||||||||||| ||||| |||| || |||||    
T  33179970 gaataatgattggtagacatccttaatgtgtatatttctttataccactatcgaaaattttaattaactaaatatatggtatgtgttaccatatcttttc 33179871  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattct 210  Q
    || ||  ||||||||||||||||  |||||||||||| ||| ||||||||||||  |||||||||||||||||| |||||||| ||||||||||||    
T  33179870 agctgcgtgaccactatttagaaagtgaaaaatgtggccacacaactaaaatgcgtgtgaccactatttttccacttagttaatcaaataaattct 33179775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 55666993 - 55666844
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacg 156  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||  |||||| |||||| ||||||||||| |||||||||    
T  55666993 taccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccaca-tttttcagttgcgtgaccattatttataagctgaaaaacgtggtcacg 55666895  T
Q  157 caactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
     ||||||||||  ||||||||||||||||||| |||||||| ||||||||||    
T  55666894 -aactaaaatgttcgtgaccactatttttccacttagttaagcaaataaatt 55666844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 35544577 - 35544426
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatg 167  Q
    |||||||||| |||  ||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35544577 aaaatttcagttaatcaaatatatggtatgtgtgatcacattttttccgttgtatgaccactatttagaagctgaaaaatgtggtcacgcaact-aaatg 35544479  T
Q  168 cacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |  |||| ||||||||||||| ||| ||||| ||||||||| |||| ||||||    
T  35544478 cgtgtgatcactatttttccacttaattaactaaataaattttggataaatag 35544426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 108 - 273
Target Start/End: Complemental strand, 1966950 - 1966787
Alignment:
Q  108 ttttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||| |||||  ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||    
T  1966950 tttttttagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaa-tgcgcgtgaccactatttttccacttaattaaccaaataaat 1966852  T
Q  208 tctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    ||||||||| ||| | |||||||| |       |||| ||||||| ||||||||||||||||||||    
T  1966851 tctggaaaactagtggtcacgcaact-aaaaaatgtggtcacacagaccatatatttggttaactg 1966787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 17633552 - 17633349
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||| | | || ||||||||| |||| | |  ||| ||||||| |  |||||||||| |||| |||||||||||||||||||||| ||||||||    
T  17633552 gaataaagataggttgatacccttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttc 17633453  T
Q  115 agttgtatgaccactatttagaagct-gaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    |||||  ||||||| || |||||| | ||||||| |||||||||||||||||||| ||||||||||||||||  | ||||||||||||||||||| ||||    
T  17633452 agttgcgtgaccac-atctagaagtttgaaaaatatggtcacgcaactaaaatgcgcgtgaccactattttttaacttagttaaccaaataaattttgga 17633354  T
Q  214 aaaat 218  Q
     ||||    
T  17633353 caaat 17633349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 19596680 - 19596895
Alignment:
Q  17 ataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt--c 114  Q
    ||||||||||||||||| | |||||||||| | |  ||| |||||||||  ||||| || | | || |||||||||||| | ||||||| |||||||  |    
T  19596680 ataaagattgatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccacattttttttc 19596779  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    || ||| | |||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||||  ||| |||||||||||||||||||||| ||    
T  19596780 agctgtgtaaccattatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgactactatttacccacttagttaaccaaataaattctgaaa 19596879  T
Q  215 aaatagggatcacgca 230  Q
    | |||| | |||||||    
T  19596880 acatagtggtcacgca 19596895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 8741002 - 8740801
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt- 113  Q
    |||||||||| | |||||| | | |||||||| ||  |||| || ||||||| ||| |||||| |||  |||| |||| |||||||||||| |||||||     
T  8741002 gaataaagatcggtagacatcttcaatgtgtacattcttttgtatcactctcaaaattttcagttaatcaaatgtatgatctgtgtgaccatattttttt 8740903  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  ||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||||| ||||||||| ||||    
T  8740902 cagttgcgtgatcactatttagaagctgaaaaatgtggtcacgta-ctaaaatgcgcgtgaccactatttttctacttagttaactaaataaattatgga 8740804  T
Q  214 aaa 216  Q
    |||    
T  8740803 aaa 8740801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 220
Target Start/End: Original strand, 42908519 - 42908671
Alignment:
Q  67 gaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaa-tgtggtcacgcaactaaaa 165  Q
    |||||||| ||  ||| ||||||||||||||| |||||| |||||| ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||||||||    
T  42908519 gaaaattttagtgaaccaaatatatggtctgtttgaccatattttt-cagttgtgtgaccac-atttaaaagttgaaaaaatgtgatcacgcaactaaaa 42908616  T
Q  166 tgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    ||| |||||||||||| |||||  |||||||||||||||||||||||||||||||    
T  42908617 tgcgcgtgaccactatgtttcctcttagttaaccaaataaattctggaaaaatag 42908671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 2433693 - 2433811
Alignment:
Q  98 tgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaa 197  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||| || || |||||    
T  2433693 tgtgatcacattttttcagttgtttgaccactatttagaagctgaaaaatgtggtcatg-aaaaaaaatgcacgtgaccactattttttcactttgttaa 2433791  T
Q  198 ccaaataaattctggaaaaa 217  Q
    ||||||||||| || |||||    
T  2433792 ccaaataaattatgaaaaaa 2433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 58 - 272
Target Start/End: Original strand, 14351005 - 14351217
Alignment:
Q  58 accactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgc 157  Q
    |||||||||||||||||||| |||| |||||||   | ||| ||  || |||||  || ||| || |||||||||| |||||| ||| ||||| ||||||    
T  14351005 accactctcgaaaatttcagttaaccaaatatacaatttgtatggtcacatttt--caattgcataaccactattttgaagctaaaagatgtgatcacgc 14351102  T
Q  158 aactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaacca 257  Q
    ||||||||||  | ||||||||||||||||| ||||||||||||||||||| ||  ||||||| | |||||||| |       | || ||||||||||||    
T  14351103 aactaaaatgtccatgaccactatttttccacttagttaaccaaataaattttgtcaaaatagtggtcacgcaactagaaaaatatggtcacacaaacca 14351202  T
Q  258 tatatttggttaact 272  Q
    |||||||||||||||    
T  14351203 tatatttggttaact 14351217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 33249732 - 33249634
Alignment:
Q  110 ttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||  ||||||||  ||||||||||||||||||  ||||||| ||||||||||    
T  33249732 ttttcagttgcgtgaccactatttagaaggtgaaaaatgtggtcacgcacataaaatgcgtgtgaccactatttttccacctagttaatcaaataaatt 33249634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 24669197 - 24669274
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||| || |||||| |||||||||||||||||| |  ||||||||||||||| || ||||||||||||||||||    
T  24669197 atttagaaactcaaaaatatggtcacgcaactaaaattcgtgtgaccactattttttcacttagttaaccaaataaat 24669274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 20874812 - 20874880
Alignment:
Q  96 tgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaa 164  Q
    |||||||||| |||||||||||||  ||| |||| |||||||||||||||||||||| |||||||||||    
T  20874812 tgtgtgaccatattttttcagttgcgtgatcactttttagaagctgaaaaatgtggtaacgcaactaaa 20874880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 1966741 - 1966841
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||||||||| ||| || | | |||| ||||||||| ||||||||||| |||| |||||||||||||||||||||| ||||||| |||||  ||||||    
T  1966741 tagacacccttactgtatacacccttttgtaccactct-gaaaatttcagttaaccaaatatatggtctgtgtgaccacatttttt-agttgcgtgacca 1966838  T
Q  128 cta 130  Q
    |||    
T  1966839 cta 1966841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 24669347 - 24669270
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattta 134  Q
    |||||||||  ||||||| || |||  |||||||||||||||||||||| |||||||||||||  |||||||||||||    
T  24669347 taccactctgaaaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactattta 24669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 19747034 - 19746943
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    ||||||||||||  |||||||  |||||||||| | |  ||| || || ||||||||||||||| |||||||||| ||||||||| ||||||    
T  19747034 agaataaagattagtagacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtctgtttgacca 19746943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 19792772 - 19792863
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    ||||||||||||  |||||||  |||||||||| | |  ||| || || ||||||||||||||| |||||||||| ||||||||| ||||||    
T  19792772 agaataaagattagtagacacttttaatgtgtacacccctttgtatcattctcgaaaatttcagttaactaaatacatggtctgtttgacca 19792863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 25007711 - 25007625
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgac 103  Q
    ||||||||||| ||||||| |||||||| || | | |||  ||||| ||||||||||||||| |||| ||||||||||||| ||||||    
T  25007711 aataaagattggtagacactcttaatgtatacaccctttg-taccattctcgaaaatttcagttaaccaaatatatggtctatgtgac 25007625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 9810958 - 9810881
Alignment:
Q  36 cttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | |  ||| ||||||||| |||| ||| || |||| |||||||||||||||||||||| |||||||    
T  9810958 cttaatgtgtaaacctatttgtaccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacatttttt 9810881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 14351265 - 14351160
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    ||||||||||||||||||  |    ||| |||||||||| |||| || || |||| ||||||||||| |||||||||| ||||||  |||||  ||||||    
T  14351265 tagacacccttaatgtgtgcacttctttgtaccactctcaaaaaatttagttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgacca 14351166  T
Q  128 ctattt 133  Q
    ||||||    
T  14351165 ctattt 14351160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 19596986 - 19596901
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||| ||||||||||||| ||| |||| ||||  | | ||||||||||| |||| |||||||||||  ||||||||| |||||||    
T  19596986 tagacgcccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacatttttt 19596901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Complemental strand, 1967016 - 1966978
Alignment:
Q  108 ttttttcagttgtatgaccactatttagaagctgaaaaa 146  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  1967016 ttttttcagttgcgtgaccactatttagaagctgaaaaa 1966978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 9809271 - 9809194
Alignment:
Q  36 cttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | |  ||| ||||||||| |||| ||| || |||| || ||||||||||||||||||| |||||||    
T  9809271 cttaatgtgtaaacctatttgtaccactctagaaattttaagttaaccaagtatatggtctgtgtgaccacatttttt 9809194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 17633288 - 17633333
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||| || |||| |||||||||||||||||||||| |||||||    
T  17633288 aaaattttagttaaccaaatatatggtctgtgtgaccacatttttt 17633333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 20871742 - 20871827
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgt 100  Q
    |||||||||||||||||||  ||| |||||||  || |||||||| |||||  |||||||||  |||  ||||||||||| |||||    
T  20871742 gaataaagattgatagacatgcttgatgtgtacgtctttttatactactctgaaaaatttcaattaatcaaatatatggtatgtgt 20871827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 42908741 - 42908685
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||||  ||||||| || |||| ||||||||||| |||||||||| |||||||    
T  42908741 taccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttttt 42908685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 42638129 - 42637962
Alignment:
Q  53 tttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggt 152  Q
    ||||||| ||||||||||||||||| |||||||||||||||| | | |||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  42638129 tttatacaactctcgaaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggt 42638030  T
Q  153 cacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||||||||||||||| ||| ||||||||||||| | |||||||||||||||||||||| ||||||||    
T  42638029 cacgcaactaaaatgcgcgtaaccactatttttcaacttagttaaccaaataaattctgaaaaaatag 42637962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 3785859 - 3786076
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| ||||||||||||||||||| | |  ||| ||||||||||||||||||||| |||| || | ||||||||||||||||| |||||||    
T  3785859 agaataaagattggtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacatttttt 3785958  T
Q  114 cagttgtatgaccactatttagaagctg-aaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgg 212  Q
    | |||   ||||||||||||| |||||| |||||| |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||    
T  3785959 ctgttacgtgaccactatttataagctgaaaaaatatggtcacgcaactaaaatgcgcgtgaccact-tttttccacttagttaaccaaataaattatgg 3786057  T
Q  213 aaaaatagggatcacgcaa 231  Q
    |||||||| | ||||||||    
T  3786058 aaaaatagtggtcacgcaa 3786076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 3823548 - 3823766
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||  ||||||||||||||||||| | |  ||| ||||||||||||||||||||| |||| || ||||||||||||||||||| |||||||    
T  3823548 agaataaagattagtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacatttttt 3823647  T
Q  114 cagttgtatgaccactatttagaagctg--aaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctg 211  Q
    | ||||  ||||||||||||| ||||||  |||||| ||||||||||||||||||||  ||||||||| |||||||| ||||||||||||||||||| ||    
T  3823648 ctgttgcgtgaccactatttataagctgaaaaaaatatggtcacgcaactaaaatgcgtgtgaccact-tttttccacttagttaaccaaataaattatg 3823746  T
Q  212 gaaaaatagggatcacgcaa 231  Q
    ||||||||| | ||||||||    
T  3823747 gaaaaatagtggtcacgcaa 3823766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 84 - 273
Target Start/End: Complemental strand, 26308782 - 26308593
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactattt 183  Q
    ||||||||||| |||||| ||| |||||| || || |  ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  26308782 aaatatatggtttgtgtggccacatttttccaattctgggaccactatttagaagctgaataatgtggtcacgcaattaaaatgcgcgtgaccactattt 26308683  T
Q  184 ttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    ||||| ||| ||||||||||||||||||||||| ||| | |||| ||| |       |||| ||||||||||||||||||| ||||||||    
T  26308682 ttccacttacttaaccaaataaattctggaaaattagtggtcacacaactaaaacaatgtggtcacacaaaccatatatttagttaactg 26308593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 44080153 - 44080359
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| |||||| | |||||||||||| ||   ||| |||||||||  | |||||||| |||| ||||||||  |||||||||||| |||||||    
T  44080153 agaataaagatcgatagatatccttaatgtgtacatatctttgtaccactctgaacaatttcagttaaccaaatatataatctgtgtgaccatatttttt 44080252  T
Q  114 -cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgg 212  Q
     ||||||  ||||||||||||||||| ||||||||||||||||  ||||||||||  |||| |||||||||||||| ||||||||||||| ||||| |||    
T  44080253 gcagttgcgtgaccactatttagaagttgaaaaatgtggtcaca-aactaaaatgtgcgtgcccactatttttccacttagttaaccaaaaaaattttgg 44080351  T
Q  213 aaaaatag 220  Q
    ||||||||    
T  44080352 aaaaatag 44080359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 4169305 - 4169111
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||||||||| || | ||||| ||||   | |||| ||||  ||||||||||||||| |||||||||||||||||| ||||| || |||         
T  4169305 gaataaagattgatagtcaactttaatatgtac--ccttttgtacctatctcgaaaatttcagttaactaaatatatggtctatgtgatcacatt----- 4169213  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
        |  ||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  4169212 ----gcgtgaccactatttagaagctgaaaaatgtggtaacgcaactaaaatgtgcgtgaccactatttttccatttagttaaccaaataaattctgaaa 4169117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 9710930 - 9710739
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| |||| ||||||||| |||| | |  ||| |||||||||  |||||||||| |||| |||||||||||     |||||| |||||||    
T  9710930 agaataaagattggtagaaacccttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatatggt-----tgaccatatttttt 9710836  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctg 211  Q
    | ||||  ||||||||| |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  9710835 cggttgcgtgaccactacttagaagctgaaaactgtggtcacgcaact-aaatacacttgaccactatttttccacttagttaaccaaataaattctg 9710739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 1705880 - 1705680
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||| || |||  |||||||||||||||| ||| || | || || | |  |||||||||| |||| ||||| ||| | ||||||| || ||||||     
T  1705880 agaataaaaatagattaacacccttaatgtgtacatccttgtgtatcattgtaaaaaatttcagttaaccaaatacatgatatgtgtgatcatattttt- 1705782  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
     |||||  |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||  |||||||||||||||| |||||||    
T  1705781 -agttgcgtgaccactatttagaagctgaaaaatatggtcatgcaactaaaatgcgcgtgaccactatttttccccttagttaaccaaataatttctgga 1705683  T
Q  214 aaa 216  Q
    |||    
T  1705682 aaa 1705680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 19280098 - 19280288
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||| | ||||||||||||| ||||| | |  ||| |||||||    || |||| || |||| |||||||||||||| ||||||| ||||||||    
T  19280098 gaataaagatcggtagacacccttaaagtgtacacccctttgtaccactaa--aatattttagttaaccaaatatatggtctgagtgaccacattttttc 19280195  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
    || ||  |||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||| |||||||||||||||||||    
T  19280196 agatgcgtgaccactgtttagaagttgaaaaatgtggtcacgcaactaaaattcgcgtgaccacta-ttttccacttagttaaccaaataaatt 19280288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 5341833 - 5341970
Alignment:
Q  74 tcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtg 173  Q
    |||| ||| |||||||||||| |||||||||| ||||||| || ||  ||||||||||||||||| |||||||||||||||  |||||||||| ||  ||    
T  5341833 tcagttaattaaatatatggtttgtgtgaccatatttttttagctgcgtgaccactatttagaagttgaaaaatgtggtcatacaactaaaatacatatg 5341932  T
Q  174 accactatttttccatttagttaaccaaataaattctg 211  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  5341933 accactatttttccacttagttaaccaaataaattctg 5341970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 19624257 - 19624406
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatg 167  Q
    |||||||||| |||  |||||||| ||||  |||| || |||| ||||||||| |||||| |||||| ||||| ||| |||||| ||| |||||||||||    
T  19624257 aaaatttcagttaatcaaatatatagtctaagtgatcatatttcttcagttgtgtgacca-tatttataagctaaaatatgtggccacccaactaaaatg 19624355  T
Q  168 cacgtgaccactatttttccatttagttaaccaaataaattctggaaaaat 218  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  19624356 cacgtgaccactatttttccacttagttaaccacataaattctggaaaaat 19624406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 11509804 - 11509969
Alignment:
Q  18 taaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagt 117  Q
    ||||||||||||||||| ||||||||||| | |  ||| |||||||||  |||||||||  |||| ||||||  | | |||||||||| ||||||||| |    
T  11509804 taaagattgatagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatatgcgatttgtgtgaccacattttttcact 11509903  T
Q  118 tgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactattt 183  Q
    ||  |||||  |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  11509904 tgcgtgacctttatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgacccctattt 11509969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 31545606 - 31545719
Alignment:
Q  107 attttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    |||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||||  | ||||||||||||||| | ||||||||| |||||||    
T  31545606 attttttcagttgagtaaccactatttagaagctgaaaaatgtggtcacacaactaaaatgtgcatgaccactatttttctacttagttaacaaaataaa 31545705  T
Q  207 ttctggaaaaatag 220  Q
    ||||||||||||||    
T  31545706 ttctggaaaaatag 31545719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 27335479 - 27335402
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  27335479 atttagaagctgaaaaatgtggtcacacaactaaaatacacgtgaccactatttttccacttagttaaccaaataaat 27335402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 42481305 - 42481402
Alignment:
Q  122 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaata 219  Q
    ||||||||||||| || ||||||||| ||||||| ||||||||||| ||||||||| |||||||| | |||||||||||||||||||||| |||||||    
T  42481305 tgaccactatttaaaaactgaaaaatatggtcacacaactaaaatgtacgtgaccattatttttctacttagttaaccaaataaattctgaaaaaata 42481402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 22432234 - 22432433
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| ||| || |||||||||||| ||    || ||  ||||||||||||||||| |||  ||| |||||||       |||| |||||||    
T  22432234 agaataaagattggtaggcatccttaatgtgtacatatccttgtattactctcgaaaatttcagttaatcaaaaatatggt-------accatatttttt 22432326  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  || |||||||||| |||||||||||||||||||  ||||||||||||  ||| ||||||||||||||  ||||| |||||||||||| || |    
T  22432327 cagttgcgtgtccactatttaaaagctgaaaaatgtggtcaatcaactaaaatgcgtgtgtccactatttttccacatagttgaccaaataaattatgaa 22432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 27707641 - 27707776
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactattt 183  Q
    ||||||||||| |||||| ||| ||||||||| |||| ||||||| |||| ||| || |||||||||||| | |||||||||||  | ||||||||||||    
T  27707641 aaatatatggtttgtgtgcccacattttttcaattgtgtgaccac-attttgaaactaaaaaatgtggtcgcacaactaaaatgtgcatgaccactattt 27707739  T
Q  184 ttccatttagttaaccaaataaattctggaaaaatag 220  Q
    || || ||  |||||||||||||||||||||||||||    
T  27707740 tttcacttgattaaccaaataaattctggaaaaatag 27707776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 13358208 - 13358101
Alignment:
Q  109 tttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||| ||| |||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  13358208 tttttcaattgcatgacca-tatttagaagctgaaaaatatggtcacacaattaaaatgcgcgttaccactatttttccacatagttaaccaaataaatt 13358110  T
Q  209 ctggaaaaa 217  Q
     || |||||    
T  13358109 ttgaaaaaa 13358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 34627468 - 34627316
Alignment:
Q  53 tttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctg-aaaaatgtgg 151  Q
    ||||||||| | | ||||||||||| ||||||    |||| |||||||||| | ||||||||||||| | |  ||||||||| || | | ||||||||||    
T  34627468 tttataccattatagaaaatttcagttaacta----tatgatctgtgtgac-acattttttcagttgcaaggacactatttaaaacccggaaaaatgtgg 34627374  T
Q  152 tcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattc 209  Q
    ||||||||||||||| || || |||| |||||||||||||||||||||||||||||||    
T  34627373 tcacgcaactaaaatacatgtaaccattatttttccatttagttaaccaaataaattc 34627316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 23163268 - 23163397
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt--cagttgtatgaccactatttagaagctgaaaaatgtggtca 154  Q
    |||||||||||||||| |||| |||   |||||||||||| |||||| | |||||||  |||||| ||||||||||| |||| |||||||||| ||||||    
T  23163268 taccactctcgaaaatatcagttaatctaatatatggtctatgtgactacattttttatcagttgcatgaccactatgtaga-gctgaaaaatatggtca 23163366  T
Q  155 cgcaactaaaatgcacgtgaccactattttt 185  Q
    | |||||||||||||||||| || |||||||    
T  23163367 cacaactaaaatgcacgtgatcattattttt 23163397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 27079454 - 27079302
Alignment:
Q  67 gaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttag--aagctgaaaaatgtggtcacgcaactaaa 164  Q
    ||||||||| | |||| |||||||||||||||||||||| | ||||||||||| |||||||| ||||    ||    ||||||||||||||| | |||||    
T  27079454 gaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattttttcaaa---aaaaatgtggtcacgtagctaaa 27079358  T
Q  165 atgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||| ||||||||  ||||||||| |||||||| |||||||||| | |||||||||    
T  27079357 atgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaatag 27079302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 27085251 - 27085099
Alignment:
Q  67 gaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttag--aagctgaaaaatgtggtcacgcaactaaa 164  Q
    ||||||||| | |||| |||||||||||||||||||||| | ||||||||||| |||||||| ||||    ||    ||||||||||||||| | |||||    
T  27085251 gaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattttttcaaa---aaaaatgtggtcacgtagctaaa 27085155  T
Q  165 atgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||| ||||||||  ||||||||| |||||||| |||||||||| | |||||||||    
T  27085154 atgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaatag 27085099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 27326124 - 27326047
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||| || ||||||||||||||||||||||||| || |||||||||||||||||| || |||||| ||||||||    
T  27326124 atttagaaactaaaaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27326047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 27332361 - 27332284
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||| || ||||||||||||||||||||||||| || |||||||||||||||||| || |||||| ||||||||    
T  27332361 atttagaaactaaaaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27332284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 27365085 - 27365008
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||| ||||||||||| |||||||| ||||||| |  |||||||||||||||||| ||| ||||||||||||||    
T  27365085 atttagaaactgaaaaatgtagtcacgcagctaaaatacgtgtgaccactatttttccacttaattaaccaaataaat 27365008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 31545810 - 31545714
Alignment:
Q  37 ttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    ||||| |||| ||| |||| || ||||||  |||||||||||||||  |||||||||||| |||||||| ||||||| |||||| ||||||||||||    
T  31545810 ttaatatgtacatctttttgtatcactctgaaaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactattt 31545714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 11501309 - 11501361
Alignment:
Q  156 gcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  11501309 gcaactaaaatgtgcgtgaccactatttttccaattagttaaccaaataaatt 11501361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 13359050 - 13358992
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttca 115  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||| || |||||||||    
T  13359050 taccactctggaaaatttcagttaattaaatatatggtctgtgtgatcatattttttca 13358992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 39126189 - 39126254
Alignment:
Q  142 aaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
    ||||||||||| |||||||||||| || || || ||||||||||||| |||||||||||||||||||    
T  39126189 aaaaatgtggttacgcaactaaaa-gcgcgcgatcactatttttccacttagttaaccaaataaatt 39126254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 178
Target Start/End: Original strand, 41571810 - 41571904
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccac 178  Q
    ||||||||||| | ||| |||| ||||||||||||   ||||||||||||| ||| ||||||||||| |||| ||  ||||||| ||||||||||    
T  41571810 aaatatatggtatatgtaaccacattttttcagttacgtgaccactatttaaaagttgaaaaatgtgatcacacagttaaaatgtacgtgaccac 41571904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 31545423 - 31545486
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcag 77  Q
    ||||||||||||| |||||||| |||||||||| |||  ||| ||| |||||||||||||||||    
T  31545423 agaataaagattggtagacacctttaatgtgtatatccctttgtactactctcgaaaatttcag 31545486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 19280400 - 19280298
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    ||||||||||||||||||| | |  ||| |||||||||  ||| ||| || |||  |||||||||||||||||||| | ||||||| ||| || ||||||    
T  19280400 tagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtctgtgtgacaacattttttaagtggtgtgacca 19280301  T
Q  128 cta 130  Q
    |||    
T  19280300 cta 19280298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 23163787 - 23163837
Alignment:
Q  148 gtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaac 198  Q
    |||||||||||||||||||| ||||||||||||||| | || |||||||||    
T  23163787 gtggtcacgcaactaaaatgtacgtgaccactatttcttcacttagttaac 23163837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 26308586 - 26308648
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccacta 130  Q
    ||||| |||| |||||||||||||||| |||||||||| ||| ||| |||||| |||||||||    
T  26308586 aaaatatcagttaactaaatatatggtttgtgtgaccacattgttttagttgtgtgaccacta 26308648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 1705605 - 1705678
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccacta 130  Q
    |||||||||  ||||||| || | |||||||||||||| |||||||  | ||||||| ||||||||||||||||    
T  1705605 taccactctgaaaaatttaagtttactaaatatatggtttgtgtgattatatttttttagttgtatgaccacta 1705678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 22432477 - 22432428
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||||||||| | ||||||| ||||| |||||||||||||    
T  22432477 aaatatatggtctgtgtgactacatttttttagttgcatgaccactattt 22432428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 27040799 - 27040683
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | | ||||| || |||||||| ||   ||| ||| ||||| ||||||||| | |||| ||||||||| ||||||||| || | |||||    
T  27040799 agaataaagataggttgacactctcaatgtgtacattcctttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtgatcacaattttt 27040700  T
Q  114 cagttgtatgaccacta 130  Q
    ||||||  |||||||||    
T  27040699 cagttgcgtgaccacta 27040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 11509989 - 11510048
Alignment:
Q  172 tgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    |||||||||||||| || ||||||||| ||||||||||| | ||||||| | ||||||||    
T  11509989 tgaccactattttttcaattagttaactaaataaattctaggaaaatagtgctcacgcaa 11510048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 18733677 - 18733595
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattt 110  Q
    |||||||| |||||||||| | |  ||||||||| |||  ||||||| || |||||||||||||||| || ||||||| ||||    
T  18733677 tagacacctttaatgtgtacacccctttataccattctgaaaaatttaagttaactaaatatatggtatgggtgaccacattt 18733595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 55165098 - 55165144
Alignment:
Q  170 cgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    |||||| |||||||||||| |||||||  ||||||||||||||||||    
T  55165098 cgtgactactatttttccacttagttattcaaataaattctggaaaa 55165144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 18733539 - 18733576
Alignment:
Q  170 cgtgaccactatttttccatttagttaaccaaataaat 207  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  18733539 cgtgagcactatttttccacttagttaaccaaataaat 18733576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 5342039 - 5341987
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgt 120  Q
    |||||||||| |||   ||||||||||||||||||||| ||||||| ||||||    
T  5342039 aaaatttcagttaatcgaatatatggtctgtgtgaccacatttttttagttgt 5341987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 61 - 273
Target Start/End: Complemental strand, 10304865 - 10304654
Alignment:
Q  61 actctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaac 160  Q
    |||||||||||||| ||  |||||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||| |||||||  |||||||||||    
T  10304865 actctcgaaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtgatcactatttagaagcagaaaaatacggtcacgcaac 10304766  T
Q  161 taaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatat 260  Q
    |||||||| |||||||||||||||| || |||||||||||||||||||||||||||| || | ||||||||||       |||| ||||||| |||||||    
T  10304765 taaaatgcgcgtgaccactattttttcacttagttaaccaaataaattctggaaaaaaagtggtcacgcaatt-aaaaagtgtggtcacacagaccatat 10304667  T
Q  261 atttggttaactg 273  Q
    |||||||||||||    
T  10304666 atttggttaactg 10304654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 3222332 - 3222530
Alignment:
Q  17 ataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcag 116  Q
    |||||||||||||||||||||||||||||| | | |||  ||  |||||  |||||||||  |||| ||||||||||| | |||||||| ||||||||||    
T  3222332 ataaagattgatagacacccttaatgtgtacaccctttg-tattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcag 3222430  T
Q  117 ttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    |||  ||||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  3222431 ttgcgtgaccactatttaaatgctgaaaaatgcggtcacgcaactaaaatgtacgtgaccactatttttccacttagttaaccaaataaattctggaaaa 3222530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 33815163 - 33815025
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccac 178  Q
    ||||||||||||| ||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33815163 taactaaatatatagtctgtgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccac 33815064  T
Q  179 tatttttccatttagttaaccaaataaattctggaaaaa 217  Q
     ||||||||| |||||||||||||||||||||| |||||    
T  33815063 catttttccacttagttaaccaaataaattctgaaaaaa 33815025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 22608259 - 22608474
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    ||||||| |||| |||| | |||||||||||| | |  ||| |||||||||| ||||||| || |||| |||||||||||||||||||| | ||||| ||    
T  22608259 gaataaaaattggtagatatccttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtctgtgtgactacatttt-tc 22608357  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    |||||  ||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||  | |||||||| ||||||| ||||| ||    
T  22608358 agttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgtgcatgaccactattttttgaattagttaatcaaataatttctgaaa 22608457  T
Q  215 aaatagggatcacgcaa 231  Q
    || ||| | ||||||||    
T  22608458 aattagtggtcacgcaa 22608474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 23595055 - 23595243
Alignment:
Q  18 taaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagt 117  Q
    |||||||||  ||||||| |||||||||| | | |||| || ||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||    
T  23595055 taaagattgggagacacctttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttttagt 23595154  T
Q  118 tgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaa 216  Q
    ||| |||| ||||||||||||||||||||||||||||  |||        | |||| |||||||||||||| ||||||||| |||||||||||| ||||    
T  23595155 tgtgtgacaactatttagaagctgaaaaatgtggtca--caa--------cgcgtggccactatttttccacttagttaacaaaataaattctgaaaaa 23595243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 138819 - 138669
Alignment:
Q  122 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||| ||||| |||||||||||||||| ||||||||     
T  138819 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatagt 138720  T
Q  222 gatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaact 272  Q
    | |||||||| |       ||||  |||||| |||||||||||||||||||    
T  138719 ggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaact 138669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 272
Target Start/End: Complemental strand, 146840 - 146690
Alignment:
Q  122 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||||| ||||| |||||||||||||||| ||||||||     
T  146840 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatagt 146741  T
Q  222 gatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaact 272  Q
    | |||||||| |       ||||  |||||| |||||||||||||||||||    
T  146740 ggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaact 146690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 3620970 - 3620714
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||||||||| |  |||||||||||| |||  ||| ||| | | ||||||||||||| |||  |||||| ||||||||| ||  | | |||| |    
T  3620970 gaataaagattgatagtcggccttaatgtgtacatcgctttgtactattttcgaaaatttcagttaatcaaatatgtggtctgtgcgaatacaatttt-c 3620872  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    | | |  ||| ||||||||||||| ||||||||||| |||| ||||||||||  | ||||||||||||||| || |||||||||||||||||||||| ||    
T  3620871 aatcgcgtgatcactatttagaagttgaaaaatgtgatcacacaactaaaatatatgtgaccactattttttcacttagttaaccaaataaattctgaaa 3620772  T
Q  215 aaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaact 272  Q
    |||||| | || ||||| |       |||  |||||||||||||||||||| ||||||    
T  3620771 aaatagtggtcgcgcaagtaaagaattgtagtcacacaaaccatatatttgtttaact 3620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 122 - 272
Target Start/End: Original strand, 9068411 - 9068560
Alignment:
Q  122 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagg 221  Q
    ||||||||||||| |||||||||||||||||||| || ||||||||| |||||  |||||||||||| |||| ||| ||||||| ||||||||||||||     
T  9068411 tgaccactatttaaaagctgaaaaatgtggtcacacatctaaaatgcgcgtgattactatttttccacttag-taaacaaataagttctggaaaaatagt 9068509  T
Q  222 gatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaact 272  Q
    | |||||||| |       |||| ||||||| |||||||||||| ||||||    
T  9068510 ggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaact 9068560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 2834974 - 2835065
Alignment:
Q  129 tatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||||| |||||||||||| |||||| ||||||||||| | |||||||| |||||||||| |||| |||| ||||||||| |||||||||||    
T  2834974 tatttaaaagctgaaaaatatggtcatgcaactaaaatacgcgtgaccattatttttccacttagctaactaaataaattatggaaaaatag 2835065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 11108288 - 11108147
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||||||   ||||||||||||||||||| ||| |||| ||  | |||  |||| ||||  |||| ||||||||| | |||||||||| |||||||    
T  11108288 agaataaagatcagtagacacccttaatgtgtatatctttttgtattattctaaaaaaattcaattaaccaaatatatgatttgtgtgaccacatttttt 11108189  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcac 155  Q
    ||||||  |||||||| |  | ||||||||||||||||||||    
T  11108188 cagttgcgtgaccactgtcaataagctgaaaaatgtggtcac 11108147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 206
Target Start/End: Original strand, 9474545 - 9474718
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaa-tttcaggtaactaaatatatggtctgtgtgac--caaattttttcagttgtatga 124  Q
    ||||||| |||||||| || ||| |||| ||||||||| ||||| |||||| || |||| |||||| ||| | ||||  || |||||||||||||  |||    
T  9474545 tagacactcttaatgtatacatccttttgtaccactcttgaaaaatttcagttagctaactatatgatctatatgacaccacattttttcagttgcgtga 9474644  T
Q  125 ccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    |       |||||||| ||||||||||||||| || ||||||||  ||||||||||||||| || |||||||||||||||||    
T  9474645 c-------tagaagctaaaaaatgtggtcacgaaa-taaaatgcgtgtgaccactattttttcacttagttaaccaaataaa 9474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 2430663 - 2430613
Alignment:
Q  170 cgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  2430663 cgtgaccactatttttccacttagttaaccaaataaattctgaaaaaatag 2430613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 7706758 - 7706876
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca-aattttttc 114  Q
    |||||||||||||| ||||| |||||||||| ||| |||| ||||| |||  ||||||| || |||   |||||||||| |||||||||| | |||||||    
T  7706758 aataaagattgataaacacctttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttc 7706857  T
Q  115 agttgtatgaccactattt 133  Q
    |||||  ||||||||||||    
T  7706858 agttgcgtgaccactattt 7706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 2835165 - 2835060
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||| |||||||||||| |||| ||| |||||||||  ||||||| || |||| |||||||   |||||||||||| ||||||| |||||| | ||||    
T  2835165 tagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatataccatctgtgtgaccacatttttttagttgtgtaacca 2835066  T
Q  128 ctattt 133  Q
    ||||||    
T  2835065 ctattt 2835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 24386412 - 24386337
Alignment:
Q  30 gacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    ||||||||||||||||| |||  |||||||||| ||  ||||||| || |||| ||||||||||||||||||||||    
T  24386412 gacacccttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtctgtgtgacca 24386337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 2430513 - 2430618
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactct-cgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacc 126  Q
    ||||||||||||||||||| ||   ||| ||||| |||   |||||||||| |||||||||||||| ||||||||||| | |||||| ||||| ||||||    
T  2430513 tagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatatgatctgtgtgacc-attttttttagttgcatgacc 2430611  T
Q  127 actattt 133  Q
    |||||||    
T  2430612 actattt 2430618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 9068599 - 9068503
Alignment:
Q  37 ttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||| | | |||| |||||||||  ||||||| || |||  ||||||||||| |||||||||| ||||||| |||||  ||||||||||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactattt 9068503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 2430704 - 2430650
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||| ||||||||||| |||||||||| |||||||||||||  ||||||||||||    
T  2430704 taaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 7706863 - 7706913
Alignment:
Q  170 cgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    ||||||||||||||||||| |||  ||||||||||| ||||||||||||||    
T  7706863 cgtgaccactatttttccacttaagtaaccaaataagttctggaaaaatag 7706913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 9068329 - 9068394
Alignment:
Q  53 tttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttg 119  Q
    |||||||||||||||||||| |||| |||| || |||||||||||| |||||| | |||||||||||    
T  9068329 tttataccactctcgaaaatatcagttaaccaagtatatggtctgtatgaccaca-tttttcagttg 9068394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 15341907 - 15341858
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||||||||||| ||||||| || ||| ||||||||||||    
T  15341907 aaatatatggtctgtgtgaccacattttttaaggtgtgtgaccactattt 15341858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 138646 - 138726
Alignment:
Q  53 tttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||  |||| || || |||| |||||||||||||||||| ||| ||||| | |||||  ||||||||||||    
T  138646 tttataccactctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattt 138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 146667 - 146747
Alignment:
Q  53 tttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||  |||| || || |||| |||||||||||||||||| ||| ||||| | |||||  ||||||||||||    
T  146667 tttataccactctaaaaaaatttagttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattt 146747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 10304636 - 10304684
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    |||||||||  |||||||||| |||| ||||||||||||||||||||||    
T  10304636 taccactctaaaaaatttcagttaaccaaatatatggtctgtgtgacca 10304684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 20084589 - 20084664
Alignment:
Q  30 gacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    ||||||||||||||||| |||  |||||||||  ||  ||||||| || |||| ||||||||||| ||||||||||    
T  20084589 gacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatatggtatgtgtgacca 20084664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 7915798 - 7915696
Alignment:
Q  26 gatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgac 125  Q
    ||||||||  ||||||||||| | | | || |||||||||  |||||||||| |||  |||||||| ||||||||||||| | ||||| |||||  ||||    
T  7915798 gatagacattcttaatgtgtacaccctcttttaccactctgaaaaatttcagttaatcaaatatatcgtctgtgtgaccacaattttttagttgcgtgac 7915699  T
Q  126 cac 128  Q
    |||    
T  7915698 cac 7915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 30056072 - 30056117
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||||||||| |||| ||||||||||||| |||||||| |||||||    
T  30056072 aaaatttcagttaaccaaatatatggtctatgtgaccacatttttt 30056117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 11108116 - 11108160
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttt 112  Q
    |||||||||  |||| |||||||||||||||||||||| ||||||    
T  11108116 aaaatttcaattaaccaaatatatggtctgtgtgaccacattttt 11108160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 34490094 - 34490287
Alignment:
Q  22 gattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgta 121  Q
    ||||| ||||||||||||||||||| ||| |||  ||||||| |  |||||||||| |||||||||||||||||||||||| || |||||||||||||||    
T  34490094 gattggtagacacccttaatgtgtatatcttttggtaccactatgtaaaatttcagttaactaaatatatggtctgtgtga-cacattttttcagttgta 34490192  T
Q  122 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaa 217  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||| | ||||||||||||||| | |||||||||||||||||||||| |||||    
T  34490193 tgaccactatttagaagctaaaaaatgtggtcatgcaa-taaaatgcgcatgaccactatttttctagttagttaaccaaataaattctgaaaaaa 34490287  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 34364131 - 34364333
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||| | | |||||| ||||| || | |||  ||| ||||||||| |||||||| || ||||||||||||||||||||||||||| |||||| |    
T  34364131 gaataaagataggttgacaccattaatatgcacatctatttgtaccactctggaaaatttaagttaactaaatatatggtctgtgtgaccatattttt-c 34364229  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
    |||||  || ||| |||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||| || ||||||||||||| |||||||||||    
T  34364230 agttgcgtggcca-tatttagaagctgaaacatgtggtcacacaactaaaatgaacgtgaccacaattttttcacttagttaaccaaaaaaattctggaa 34364328  T
Q  215 aaata 219  Q
    |||||    
T  34364329 aaata 34364333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 29677202 - 29677091
Alignment:
Q  109 tttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaatt 208  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||    
T  29677202 tttttcagttgagtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaatt 29677103  T
Q  209 ctggaaaaatag 220  Q
    ||| ||||||||    
T  29677102 ctgaaaaaatag 29677091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 42604192 - 42604372
Alignment:
Q  91 tggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatt 190  Q
    |||| |||||||||| ||||||||||||| || ||||||||||||||||| |||| | ||||||  |||||||||||| ||||||||||||||||||| |    
T  42604192 tggtatgtgtgaccacattttttcagttgcatcaccactatttagaagcttaaaagtatggtcatacaactaaaatgcgcgtgaccactatttttccact 42604291  T
Q  191 tagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaac 271  Q
    |||||||| |||||||||||| |||||||| |||||| ||| |       |||| |||||||||||||||||||| |||||    
T  42604292 tagttaacgaaataaattctgaaaaaatagtgatcacacaactaaaacaatgtggtcacacaaaccatatatttgattaac 42604372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 25238439 - 25238575
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccac 178  Q
    |||||||||||||||||| | ||| ||||||||||||||||  ||||||||||||||||||| ||||||||||||||| || |||||||  ||| |||||    
T  25238439 taactaaatatatggtctatatgatcaaattttttcagttgcgtgaccactatttagaagctaaaaaatgtggtcacgtaa-taaaatgtgcgtaaccac 25238537  T
Q  179 tatttttccatttagttaaccaaataaattctggaaaa 216  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  25238538 tatttttccacttagttaaccaaataaattctgaaaaa 25238575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 29167943 - 29167764
Alignment:
Q  92 ggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccattt 191  Q
    ||||||||| | || |||||||||||||  ||||||||||||||||||| |||||| ||||||||||| |||||||| | ||||||||||||||||| ||    
T  29167943 ggtctgtgtaatcacattttttcagttgcgtgaccactatttagaagctaaaaaatatggtcacgcaa-taaaatgcgcatgaccactatttttccactt 29167845  T
Q  192 agttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    |||||||||||||||||| | |||| ||| | ||| |||| |       |||| ||||||||||||||||||| ||||||||    
T  29167844 agttaaccaaataaattccgaaaaactagtggtcaggcaact-aaaaaatgtggtcacacaaaccatatatttagttaactg 29167764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 5831431 - 5831685
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||||| |||||||  |||||| ||| | | |||| || || |||  ||||||| || |||||||| ||||||| ||||||| || ||||| |     
T  5831431 gaataaagattggtagacact-ttaatgagtacacccttttgtaacattctgaaaaattttagttaactaaagatatggtatgtgtgatcatattttgtt 5831529  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaa 214  Q
     |||| |||||||||||||||||| | |||||| ||||| || |||||||||||   | ||||| ||||||||| |||||||||||||||||||||||||    
T  5831530 tgttgcatgaccactatttagaagttaaaaaatatggtcccgtaactaaaatgcgtattaccacaatttttccacttagttaaccaaataaattctggaa 5831629  T
Q  215 aaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaa 270  Q
    || ||| | |||||||| |       | || ||||||| |||||||||||||||||    
T  5831630 aattagtggtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaa 5831685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 9468064 - 9468199
Alignment:
Q  72 tttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacg 171  Q
    |||||| |||| ||||||||||| |||||||||| |||||||||||||| |||||| |||||| |||||| |||||||| |||| ||||||||||| | |    
T  9468064 tttcagttaaccaaatatatggtatgtgtgaccatattttttcagttgtctgacca-tatttaaaagctgtaaaatgtgatcacacaactaaaatgtatg 9468162  T
Q  172 tgaccactattttt-ccatttagttaaccaaataaat 207  Q
    |||| ||||||||| ||| ||||||||||||||||||    
T  9468163 tgactactatttttgccacttagttaaccaaataaat 9468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 38951844 - 38952010
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt-cagttgtatgaccactatttagaagctgaaaaa--tgtggtc 153  Q
    |||||||||||||||||| || |||| ||||||||||||| ||  |||| ||||||| ||| ||  |||||||||||||||| ||||||||  | | |||    
T  38951844 taccactctcgaaaatttaagttaaccaaatatatggtctatgaaaccacatttttttcagctgcgtgaccactatttagaaactgaaaaaaatatagtc 38951943  T
Q  154 acgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||||||||||||||   ||||||||||||||| | ||||||||||||||||||| |||| ||||||    
T  38951944 acgcaactaaaatgcgtctgaccactatttttctacttagttaaccaaataaattttggagaaatag 38952010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 517623 - 517433
Alignment:
Q  18 taaagattgatagacacccttaatgtgtagatcattt---tataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    ||||||| |||||||| |||||||||||| |||||||   | || ||||||| ||||||| || |||| ||||||||| | ||||  |||| |||||| |    
T  517623 taaagatcgatagacatccttaatgtgtacatcatttatttgtatcactctcaaaaatttaagttaaccaaatatatgatatgtgcaaccacattttt-c 517525  T
Q  115 agttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    | |||  | ||||||||||||||| | |||||| || |||||||||||||||| || |||| |||||||||  | |||||||||||||||||    
T  517524 aattgcgtaaccactatttagaagttaaaaaatatgatcacgcaactaaaatgaacatgactactattttttaacttagttaaccaaataaa 517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 2996025 - 2996101
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    |||||||||||||||||||||||||||||| |||||||| |||| || ||||||||||  |||||||||||||||||    
T  2996025 atttagaagctgaaaaatgtggtcacgcaaataaaatgcgcgtggccgctatttttccgcttagttaaccaaataaa 2996101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 5855005 - 5855205
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||||||| | ||||||| |||||||| || |||  ||| ||| ||| |  |||||||||| |||| |||||||||||||||||||||| || |||||    
T  5855005 gaataaagataggtagacacgcttaatgtttacatccctttgtactact-tgaaaaatttcagctaaccaaatatatggtctgtgtgaccacatattttc 5855103  T
Q  115 agttgtatgaccac-----------tatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaat 203  Q
    |||||| |||||||            ||||| ||||| ||| |||||||||| ||||||||||  |||||||  ||||||||||||||| ||||||||||    
T  5855104 agttgtgtgaccacaatttttccaacatttaaaagctaaaatatgtggtcacacaactaaaat--acgtgacgtctatttttccatttaattaaccaaat 5855201  T
Q  204 aaat 207  Q
    ||||    
T  5855202 aaat 5855205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 13350894 - 13350999
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||| |||||||||||| | | |||| ||||||||||||||||||||| |||| ||||||||||| ||||||| ||  |||||||||||| ||| | |    
T  13350894 tagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgttttttcagttgcatggcta 13350993  T
Q  128 ctattt 133  Q
    ||||||    
T  13350994 ctattt 13350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 34490391 - 34490289
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    ||||||| ||||||||||| | || ||| |||||||||  |||||||||| | || |||||||||||||||||||||| ||||||| |||||  ||||||    
T  34490391 tagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgtgacca 34490292  T
Q  128 cta 130  Q
    |||    
T  34490291 cta 34490289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 2569961 - 2570022
Alignment:
Q  170 cgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||    
T  2569961 cgtgaccactatttttccacttagttaaccaaataaattctagaaaaatagtggtcacgcaa 2570022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 9929935 - 9929836
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaa-atgtggtcacgcaactaaaat 166  Q
    |||||||||  ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||||     | ||||| |||||||||||||||||||||    
T  9929935 aaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattt--tttcagaaaatatgtggtcacgcaactaaaat 9929838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 272
Target Start/End: Complemental strand, 9929778 - 9929685
Alignment:
Q  179 tatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaact 272  Q
    |||||||||||||||||||||||||||||| || |||||||  | || ||||| |       |||| ||| |||||||||||||||||||||||    
T  9929778 tatttttccatttagttaaccaaataaattttgaaaaaatatcggtcgcgcaactaaaataatgtggtcatacaaaccatatatttggttaact 9929685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 38244848 - 38244801
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactat 131  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||||    
T  38244848 aaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 5831695 - 5831633
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccacta 130  Q
    |||||||||  |||| |||||||||||||||||||||| ||||||| |||||  |||||||||    
T  5831695 aaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccacta 5831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 29167757 - 29167818
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccacta 130  Q
    |||||||||| |||||||||||||||| |||||||||| ||||||| |||||  |||||||||    
T  29167757 aaaatttcagttaactaaatatatggtttgtgtgaccacatttttt-agttgcctgaccacta 29167818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 29677032 - 29677096
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    ||||||| || |||| |||||||||| ||||||||||| ||||||| ||||| |||||||||||||    
T  29677032 aaaattttagttaaccaaatatatggcctgtgtgaccacatttttt-agttgcatgaccactattt 29677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 5855283 - 5855201
Alignment:
Q  52 ttttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattta 134  Q
    |||| |||||||||  ||||||| || |||| ||||||||||| |||||||||| ||||  | |||||  |||||||||||||    
T  5855283 ttttgtaccactctgaaaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagttgcgtgaccactattta 5855201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 24708074 - 24708123
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||||||||||||||| ||||||| || ||  ||||||||||||    
T  24708074 aaatatatggtctgtgtgaccacattttttaaggtgcgtgaccactattt 24708123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 38952070 - 38952005
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||| |||| |||| |||||| | |||||||| ||||||| |||||  ||||||||||||    
T  38952070 aaaatttcagttaacaaaatgtatggtatatgtgaccatatttttttagttgcttgaccactattt 38952005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 2570082 - 2570006
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||| |||| |||||||| || |||| || |||||||| ||||| |||| ||||||| |||||  ||||||||||||    
T  2570082 taccgctctggaaaatttaagttaaccaagtatatggtttgtgttaccatattttttgagttgcgtgaccactattt 2570006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 17227500 - 17227548
Alignment:
Q  84 aaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatt 132  Q
    |||||||||||||||||||||| ||||||| || ||  |||||||||||    
T  17227500 aaatatatggtctgtgtgaccacattttttaaggtgcgtgaccactatt 17227548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 28499720 - 28499644
Alignment:
Q  37 ttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||| ||||| |||||||| ||||| |||  |||||||||| |||| |||||||||||| |  |||||| |||||||    
T  28499720 ttaacgtgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggtccggatgaccacatttttt 28499644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 13312498 - 13312754
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttca 115  Q
    ||||||||||| |||| ||| |||||||||| | | |||| ||| | | ||||||||||||  |||| ||||||||||||| ||||| || ||||| |||    
T  13312498 aataaagattggtagatacctttaatgtgtacacccttttgtactattttcgaaaatttcaattaaccaaatatatggtctatgtgaacacatttt-tca 13312596  T
Q  116 gttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaa 215  Q
    ||||  ||||| ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||| ||||||    
T  13312597 gttgggtgaccgctatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtggcaactatttttccacttagttaaccaaataaattatggaaa 13312696  T
Q  216 aatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    ||||| | |||||||| |       |||| ||||||||| ||||||| ||||||||||    
T  13312697 aatagtggtcacgcaactaaaaaaatgtggtcacacaaatcatatatatggttaactg 13312754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 22169361 - 22169559
Alignment:
Q  21 agattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgt 120  Q
    |||||| ||||||||||||||||||| | | | || || || | | ||||||||||| |||||||||||||||  | ||||| || |||||||||||||     
T  22169361 agattggtagacacccttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgc 22169460  T
Q  121 atgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaata 219  Q
     ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||| || |||||||    
T  22169461 gtgaccactatttataagttgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttcaacgtagttaaccaaataaattttgaaaaaata 22169559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 43461912 - 43461707
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||| | ||||||| ||||||||||  | |  ||| || |||| | ||||||||||| |||  ||||||||||||| || ||||| |||||||    
T  43461912 agaataaagataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatatggtctttg-gaccatatttttt 43461814  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||| ||||||||||||||||| ||||||||  ||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||| |    
T  43461813 cagttgtgtgaccactatttagaagttgaaaaatacggtcacgcaactaaaattcacgtaaccactatttttccacttagtaaaccaaataaattctgaa 43461714  T
Q  214 aaaatag 220  Q
    |||||||    
T  43461713 aaaatag 43461707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 33959189 - 33958988
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttca 115  Q
    ||||||||||  ||||||||||||||||||| ||   ||||||||| ||||||||| ||||| |||| ||||||||  ||| |||||  | |||||||||    
T  33959189 aataaagattagtagacacccttaatgtgtatattcctttataccattctcgaaaacttcagttaacaaaatatata-tctatgtgattacattttttca 33959091  T
Q  116 gttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaa 215  Q
    | ||  |||||||||||||||| ||||||||| |||||||||||||||||| |  || ||||||||||||||| |||||| |||||||||||||||||||    
T  33959090 gctgcgtgaccactatttagaaactgaaaaatatggtcacgcaactaaaatccgagtaaccactatttttccacttagttgaccaaataaattctggaaa 33958991  T
Q  216 aat 218  Q
    |||    
T  33958990 aat 33958988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 31189473 - 31189680
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttt-- 111  Q
    |||||||||||||  ||||||| ||||| |||| | |||||| ||||||||||||||||||||| |||| |||||||| || |||||||||| |||||      
T  31189473 agaataaagattggcagacacctttaatatgtacaacattttgtaccactctcgaaaatttcagttaaccaaatatatagtatgtgtgaccacatttttg 31189572  T
Q  112 ttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctg 211  Q
    | || ||| ||||  |||||||||||||||||||||||| ||||||||||||||||   |||||||||| ||||||| || ||||| |||||||||||||    
T  31189573 tccaattgcatgattactatttagaagctgaaaaatgtgatcacgcaactaaaatgtttgtgaccacta-ttttccacttggttaatcaaataaattctg 31189671  T
Q  212 gaaaaatag 220  Q
    |||| ||||    
T  31189672 gaaacatag 31189680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 220
Target Start/End: Original strand, 35922722 - 35922835
Alignment:
Q  107 attttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaa 206  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  35922722 attttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgtatgaccactatttttccatttagttaaccaaataaa 35922821  T
Q  207 ttctggaaaaatag 220  Q
    ||||| ||||||||    
T  35922822 ttctgaaaaaatag 35922835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 79 - 216
Target Start/End: Complemental strand, 38522114 - 38521978
Alignment:
Q  79 taactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccac 178  Q
    |||| ||||||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||    
T  38522114 taaccaaatatatggtctatgtgaccacattttttcaattgcatgaccactatttagaagctgaaaaatgtggtcacgcga-taaaatgcgcgtgaccac 38522016  T
Q  179 tatttttccatttagttaaccaaataaattctggaaaa 216  Q
    ||||||| || ||||||||| ||||||||||| |||||    
T  38522015 tatttttacacttagttaactaaataaattctagaaaa 38521978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 42034771 - 42034904
Alignment:
Q  132 ttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| | ||||||||    
T  42034771 ttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccacttagttaaccaaataaattttggaaaactagtggtcacgcaa 42034870  T
Q  232 ttnnnnnnntgtgatcacacaaaccatatatttg 265  Q
     |       |||||| ||||| ||||||||||||    
T  42034871 ctaaaaaaatgtgattacacataccatatatttg 42034904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 36169544 - 36169394
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| |||||| | ||||||| || ||| ||||| ||||||||| |||||||||| | |  ||||||||||| |||||||||| ||| |||    
T  36169544 agaataaagattgctagacatctttaatgtatacatc-ttttacaccactctcaaaaatttcagctgatcaaatatatggtatgtgtgaccacattcttt 36169446  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaa 165  Q
    ||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  36169445 cagttgcgtgaccactatttagaagctgaaaaatatggtcacgcaactaaaa 36169394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 19621630 - 19621468
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt----agaagctgaaaaatgtggtcacgcaactaa 163  Q
    |||||||||| |||| ||||||||||| |||||||||| |||||| || |||  ||||||||||||    ||||     |||| ||||||||||||||||    
T  19621630 aaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactatttttccagaa-----aaaacgtggtcacgcaactaa 19621536  T
Q  164 aatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaa 231  Q
    ||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||    
T  19621535 aatgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaaaatagtgattacgcaa 19621468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 43262911 - 43262708
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    ||||||||||   ||||||||||||||||||| | |  ||| ||| ||| |  |||||||||| |||| |||||||||||||||||||||| |||| ||     
T  43262911 gaataaagataagtagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacatttgttt 43262812  T
Q  115 agttgtatgaccactattt-----------agaagctgaa---aaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaacca 200  Q
    |||| | |||| |||||||           | ||||||||   |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||    
T  43262811 agttatgtgactactatttttccaacatttaaaagctgaagaaaaatgtggtcacacaactaaaatgcgcgtgaccactatttttccacttagttaacca 43262712  T
Q  201 aata 204  Q
    ||||    
T  43262711 aata 43262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 7156000 - 7156182
Alignment:
Q  37 ttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt--- 133  Q
    |||||||||| ||| |||| ||||||| | ||||||||||| |||  ||||||||||| | | ||| || |||||||||||| ||||||||||||||       
T  7156000 ttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggtttatatgatcacattttttcagttatatgaccactatttttt 7156099  T
Q  134 ---------agaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
             ||||||||||||||||| || ||||||||||||   |||||||| |||||||||| ||| ||||||||||||||    
T  7156100 tcagaatttagaagctgaaaaatgtgatcgcgcaactaaaatatgcgtgaccattatttttccacttaattaaccaaataaat 7156182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 30704476 - 30704398
Alignment:
Q  130 atttagaagctgaaaaa-tgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    ||||| ||||||||||| ||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  30704476 atttaaaagctgaaaaaatgtggtcgcacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataaat 30704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 15221727 - 15221662
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| | |||| ||||||||||||    
T  15221727 aaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattt 15221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 30045885 - 30045940
Alignment:
Q  154 acgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattc 209  Q
    ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||    
T  30045885 acgcaactaaaatacgcgtgaccactatttttccatttaattaaccaaataaattc 30045940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 273
Target Start/End: Original strand, 15221618 - 15221720
Alignment:
Q  171 gtgaccactatttttccatttagttaaccaaataaattctggaaaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaa 270  Q
    ||||||||| |||||||| ||| ||||| |||||||||||| |||||||| | |||| |||||       |||| ||||||| ||||||||||| |||||    
T  15221618 gtgaccactctttttccacttaattaactaaataaattctgaaaaaatagtggtcacacaattaaaaaaatgtggtcacacagaccatatatttagttaa 15221717  T
Q  271 ctg 273  Q
    |||    
T  15221718 ctg 15221720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 35922607 - 35922704
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||| | ||||||| ||||||||||| |||  ||| || ||||||  |||||||||| |||  ||||||||||| |||||||||| |||||||    
T  35922607 aataaagatcggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatatggtatgtgtgaccacatttttt 35922704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 13312797 - 13312696
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||||||||||||||||     |||| |||||||||  |||||||||| |||| | ||||||| | |||||||||| ||||||| |||||  ||||||    
T  13312797 tagacacccttaatgtgtac----ttttgtaccactctgaaaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgacca 13312702  T
Q  128 ctattt 133  Q
    ||||||    
T  13312701 ctattt 13312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 2477302 - 2477357
Alignment:
Q  165 atgcacgtgaccactatttttccatttagttaaccaaataaattctggaaaaatag 220  Q
    |||| |||| |||||||||||| | |||||||||||||||||||||| ||||||||    
T  2477302 atgcgcgtggccactatttttcgacttagttaaccaaataaattctgtaaaaatag 2477357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 35922895 - 35922830
Alignment:
Q  68 aaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    ||||||| || |||| |||| ||||||||||| ||||| ||||||| ||||| |||||||||||||    
T  35922895 aaaatttaagttaaccaaatttatggtctgtgggaccatattttttaagttgcatgaccactattt 35922830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 7156226 - 7156178
Alignment:
Q  86 atatatggtctgtgtgaccaaattttttcagttgtatgaccactattta 134  Q
    |||||||||| ||||||||| ||||||| |||||| |||||||||||||    
T  7156226 atatatggtccgtgtgaccacatttttttagttgtgtgaccactattta 7156178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 33958887 - 33958991
Alignment:
Q  28 tagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgacca 127  Q
    |||||||||||||| |||| ||| |||  |||||||||  |||||||||  |||| ||||||||||||| ||| | || ||||||| || || |||||||    
T  33958887 tagacacccttaatatgtatatcctttg-taccactctgaaaaatttcacttaaccaaatatatggtctatgtaatcacatttttttagctgcatgacca 33958985  T
Q  128 ctattt 133  Q
    | ||||    
T  33958986 caattt 33958991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 15221576 - 15221624
Alignment:
Q  57 taccactctcgaaaatttcaggtaactaaatatatggtctgtgtgacca 105  Q
    ||||| |||||||||||| || |||| ||||||||||| ||||||||||    
T  15221576 taccattctcgaaaattttagttaaccaaatatatggtttgtgtgacca 15221624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 273
Target Start/End: Complemental strand, 421 - 162
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    |||| ||| |||| || ||||||||||| |||| |||  ||| |||||||||  ||| |||||| |||| |||||||||||||||||| ||| | |||||    
T  421 agaacaaaaattggtaaacacccttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtctgtgtggccacacttttt 322  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctgga 213  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| ||| |||||||| || || |    
T  321 cagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgaccactatttttccacttacttatccaaataatttttgaa 222  T
Q  214 aaaatagggatcacgcaattnnnnnnntgtgatcacacaaaccatatatttggttaactg 273  Q
    ||| ||| | |||||||| |       ||||||||||||  |||||||||||||||||||    
T  221 aaattagtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaactg 162  T

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Target: scaffold0251 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 10825 - 10622
Alignment:
Q  16 aataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttca 115  Q
    ||||||||| | || ||| ||||||| |||| ||   ||| ||||||||| ||||||||||  |||| |||||||||||||  ||||| | ||||||| |    
T  10825 aataaagataggtaaacatccttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatatggtctaggtgactatattttttaa 10726  T
Q  116 gttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaattctggaaa 215  Q
    |||| |||||||||||||| ||  | ||||||||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||  |||    
T  10725 gttgcatgaccactatttaaaaaataaaaaatgtggtcacgcaactaaaatacccgtgaccattatttttccacttagttaaccaaataaattctcaaaa 10626  T
Q  216 aata 219  Q
    ||||    
T  10625 aata 10622  T

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Target: scaffold0123 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 24153 - 24031
Alignment:
Q  93 gtctgtgtgaccaaattttttcagttgtatgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccattta 192  Q
    |||| |||||| | ||||||||||||| |||||||||||||||||||| ||||||||||| |||| | |||||||| ||||||||||||||||||| |||    
T  24153 gtctatgtgactacattttttcagttgcatgaccactatttagaagctaaaaaatgtggttacgc-attaaaatgcgcgtgaccactatttttccactta 24055  T
Q  193 gttaaccaaataaattctggaaaa 216  Q
     || ||||||||||||||| ||||    
T  24054 ttttaccaaataaattctgaaaaa 24031  T

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Target: scaffold0126 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 21690 - 21549
Alignment:
Q  14 agaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaatttttt 113  Q
    ||||||||||||| |||||||| |||||||||| |    ||| | ||||| | |||||| |||| ||||  ||||||||||||||||||||| |||||||    
T  21690 agaataaagattggtagacacctttaatgtgtacacg--tttgtgccactttagaaaatctcagttaaccgaatatatggtctgtgtgaccacatttttt 21593  T
Q  114 cagttgtatgaccactatttagaagctgaaaaatgtggtcacgc 157  Q
    ||||||  |||||||||| |||||||||||||||||||||||||    
T  21592 cagttgcgtgaccactatatagaagctgaaaaatgtggtcacgc 21549  T

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Target: scaffold0043 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 87035 - 87112
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||    
T  87035 atttagaaactgaaaaatgtggtcacgcaactaaaatacacgtgaccactatttttctacttagttaaccaaataaat 87112  T

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Target: scaffold0043; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 86873 - 86991
Alignment:
Q  15 gaataaagattgatagacacccttaatgtgtagatcattttataccactctcgaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttc 114  Q
    |||||| ||||| || |||  ||||||||||| | |  ||| ||||| ||| ||||| ||||  |||  |||||||| || |||||||||| ||||||||    
T  86873 gaataatgattggtaaacattcttaatgtgtacacccctttctaccattctagaaaacttcaattaatcaaatatatagtttgtgtgaccacattttttc 86972  T
Q  115 agttgtatgaccactattt 133  Q
     ||||| ||||||||||||    
T  86973 ggttgtgtgaccactattt 86991  T

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Target: scaffold0024 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 112158 - 112235
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  112158 atttagaagctgaaaaacgtggtcacgcaattaaaatgcacgtgaccactatttttccacttagttaactaaataaat 112235  T

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Target: scaffold0291 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 5870 - 5947
Alignment:
Q  130 atttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccatttagttaaccaaataaat 207  Q
    ||||| |||||||||| ||||||  |||||||||||| | |||||||||||||||| || ||| ||||||||||||||    
T  5870 atttaaaagctgaaaagtgtggtgtcgcaactaaaatacgcgtgaccactatttttgcacttaattaaccaaataaat 5947  T

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Target: scaffold0213 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 24995 - 24932
Alignment:
Q  69 aaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactatt 132  Q
    ||||||||| || | |||||||| ||||||||||||| || ||||||||||| |||||||||||    
T  24995 aaatttcagttagccaaatatatagtctgtgtgaccacatgttttcagttgtgtgaccactatt 24932  T

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Target: scaffold0213; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 25416 - 25350
Alignment:
Q  67 gaaaatttcaggtaactaaatatatggtctgtgtgaccaaattttttcagttgtatgaccactattt 133  Q
    |||||||| || |||| ||||||||||||||| | |||| ||||||  |||||||||||||||||||    
T  25416 gaaaattttagttaaccaaatatatggtctgtataaccacatttttaaagttgtatgaccactattt 25350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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