View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_16 (Length: 301)
Name: NF16666_low_16
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 23398404 - 23398132
Alignment:
| Q |
14 |
attatactaacctcatttacaaccgttaatacacaaaaatcagtgcatatgccctagcacacaaaaactctttaagcagtgcagaaagctatnnnnnnnn |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23398404 |
attacactaacctcatttacaaccgttaatacacaaaaatcagtgcatatgccctagcacataaaaactctttaagcagtgcagaaagctataaaaaaaa |
23398305 |
T |
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| Q |
114 |
tgcgaaatcattttacttgagtccctttaacaaaagaaacatcttctgtgctatcaagagatgacagaaggcgtttcgcttgttcatcatctaattccat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23398304 |
tgcgaaatcattttacttgagtccctttaacaaaagaaacatcttctgtgctatcaagagatgacagaaggcgtttcgcttgttcatcatctaattccat |
23398205 |
T |
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| Q |
214 |
tgattcacaaggcgtggccgttgaaagagaatcggtaacttcatcttctgcaaaacattgaccaagatatatg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23398204 |
tgattcacaaggcgtggccgttgaaagagaatcggtaacttcatcttctgcaaaacattgaccaagatatatg |
23398132 |
T |
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