View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_18 (Length: 279)
Name: NF16666_low_18
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 33951258 - 33951534
Alignment:
| Q |
1 |
attgagaggagaggcatgtgtttttgaaggccccccaccactccttaccatgataaagttttacaccccctttggaatttataaccaagttaaaggaaaa |
100 |
Q |
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| T |
33951258 |
attgagaggagaggcatgtgtttttgaaggccccccaccactccttaccatgataaagttttacacctcctttggaatttataaccaagttaaacgaaaa |
33951357 |
T |
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| Q |
101 |
gattctgattgagatatttaacgaatgacataatgaaaaacactaatagctagagataaggtagtttattttgtatttgtatttttaagttttaaatcta |
200 |
Q |
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| T |
33951358 |
gattctgattgagatatttaatgaatgacataatgaaaaacactaatagctagagataaggtagtttattttgtatttgtatttttaagttttaaatcta |
33951457 |
T |
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| Q |
201 |
agc------atatatatacgaactttaatgaaagaacacatgtttaaagactgagatatcacaagaaaataagacca |
271 |
Q |
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||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33951458 |
agcatatatatatatatatgaactttaatgaaagaacacatatttaaagactgagatatcacaagaaaataagacca |
33951534 |
T |
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