View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_19 (Length: 268)
Name: NF16666_low_19
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 381984 - 382037
Alignment:
| Q |
197 |
tggagagagtttaaagactacacatttgaatgaatcaactgttactgggaaagt |
250 |
Q |
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| T |
381984 |
tggagagaatttaaagactacacatttgaatgaatcaactgttactgggaaagt |
382037 |
T |
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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 41984491 - 41984389
Alignment:
| Q |
5 |
taaaatttggactaactttgcaaacagaactggtaaattgaggagcataaaattaatatt----gagtatttatgtatcacatt-catcttcatgaaagc |
99 |
Q |
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| T |
41984491 |
taaaatttggacgaattgtgcgaacagaaccggtaaattgaggagcataaaattaatattacaagagtacttatgtatcgcattccctcttcatgaaagc |
41984392 |
T |
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| Q |
100 |
taa |
102 |
Q |
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||| |
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| T |
41984391 |
taa |
41984389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 38287963 - 38287927
Alignment:
| Q |
135 |
aatcaatactaacaaatctctaactatatctcactaa |
171 |
Q |
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| T |
38287963 |
aatcaatactaacaaatctttaactatatctaactaa |
38287927 |
T |
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