View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16666_low_20 (Length: 260)

Name: NF16666_low_20
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16666_low_20
NF16666_low_20
[»] chr4 (1 HSPs)
chr4 (16-253)||(51988930-51989167)
[»] chr6 (3 HSPs)
chr6 (16-188)||(19855863-19856023)
chr6 (91-139)||(18662891-18662938)
chr6 (91-139)||(18669354-18669401)
[»] chr8 (5 HSPs)
chr8 (16-72)||(13145660-13145716)
chr8 (16-72)||(13146744-13146800)
chr8 (16-66)||(26378969-26379019)
chr8 (16-66)||(41490863-41490913)
chr8 (16-72)||(26380042-26380098)
[»] chr7 (1 HSPs)
chr7 (16-49)||(7113227-7113260)
[»] chr3 (2 HSPs)
chr3 (16-72)||(5751104-5751160)
chr3 (16-72)||(5788063-5788119)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 51988930 - 51989167
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatcnnnnnnnnnnnnnaaactagtgtaatttctttgattaaaaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||    
T  51988930 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatcttttttattttttaaactagtgtaatttctttgattaaaaact 51989029  T
Q  116 caaaaggacattggttatgtcaattctatctgttgtcaagccaaaagagaggcagacacgtgcttttgatggtagacactgtatggaatggtattgctat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51989030 caaaaggacattggttatgtcaattctatctgttgtcaagccaaaagagaggcagacacgcgcttttgatggtagacactgtatggaatggtattgctat 51989129  T
Q  216 aactttatagtatttgggatgtagactgtcatattctt 253  Q
    || |||||||||||||||||||||||||||||||||||    
T  51989130 aattttatagtatttgggatgtagactgtcatattctt 51989167  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 19856023 - 19855863
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatcnnnnnnnnnnnnnaaactagtgtaatttctttgattaaaaact 115  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||              ||| ||||| |||||||||||||||||||    
T  19856023 atttcttcgtcatcatcgtataccatgtgttttatttggtcaattacaagttatatccc------------aacgagtgtgatttctttgattaaaaact 19855936  T
Q  116 caaaaggacattggttatgtcaattctatctgttgtcaagccaaaagagaggcagacacgtgcttttgatggt 188  Q
    ||||||||||| ||||||||||||| |||| ||||||||| |||| |||||||||| | | |||| |||||||    
T  19855935 caaaaggacatcggttatgtcaattatatccgttgtcaagtcaaatgagaggcagatatgcgcttctgatggt 19855863  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 18662891 - 18662938
Alignment:
Q  91 agtgtaatttctttgattaaaaactcaaaaggacattggttatgtcaat 139  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||||    
T  18662891 agtgtaatttctttgattaaaaactc-aatggacactggttatgtcaat 18662938  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 18669354 - 18669401
Alignment:
Q  91 agtgtaatttctttgattaaaaactcaaaaggacattggttatgtcaat 139  Q
    ||||||||||||||||||||||||||  ||||| | |||||||||||||    
T  18669354 agtgtaatttctttgattaaaaactc-caaggatactggttatgtcaat 18669401  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 13145716 - 13145660
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13145716 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 13145660  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 13146744 - 13146800
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13146744 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 13146800  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 26379019 - 26378969
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagt 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26379019 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagt 26378969  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 41490913 - 41490863
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagt 66  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  41490913 atttcttcatcatcatcatctaccatgtgttttatttggtcaattacaagt 41490863  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 26380042 - 26380098
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 72  Q
    |||||||||||||||||||  |  |||||||||||||||||||||||||||||||||    
T  26380042 atttcttcgtcatcatcgtaaataatgtgttttatttggtcaattacaagttatatc 26380098  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 7113260 - 7113227
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgtttta 49  Q
    |||||||||||||||||||||||||||| |||||    
T  7113260 atttcttcgtcatcatcgtctaccatgtatttta 7113227  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5751104 - 5751160
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 72  Q
    |||||||||||||||||  |||| ||||||| |||||||||  | ||||||||||||    
T  5751104 atttcttcgtcatcatcagctactatgtgttctatttggtctgtcacaagttatatc 5751160  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 5788063 - 5788119
Alignment:
Q  16 atttcttcgtcatcatcgtctaccatgtgttttatttggtcaattacaagttatatc 72  Q
    |||||||||||||||||  |||| ||||||| |||||||||  | ||||||||||||    
T  5788063 atttcttcgtcatcatcagctactatgtgttctatttggtctgtcacaagttatatc 5788119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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