View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_4 (Length: 510)
Name: NF16666_low_4
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Original strand, 42068009 - 42068482
Alignment:
| Q |
20 |
ttaaattagttagtgaagttacgtgttagatttttgttgttgatggattattgcatactccacagaggtgcggtttatcatggaatttttcttcataatc |
119 |
Q |
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| T |
42068009 |
ttaaattagttagtgaagttacgtgttagatttttgttgttgatggattattgcatactgcacagaggtgcggtttatcatggaatttttcttcataatc |
42068108 |
T |
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| Q |
120 |
atcggtacaaaataaaattattttttaagcataaaattgggctttctttttacttctctcaaaatcactgcaaatctaataccttagttgaggatgtttc |
219 |
Q |
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| T |
42068109 |
atcggtacaaaataaaattattttttaagcataaaattgggctttctttttacttctctcaaaatcactgcaaatctaataccttagttgaggatgtttc |
42068208 |
T |
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| Q |
220 |
aaacatggaagtattgattggatcgtggttgagaggtctatgtgaagcatatgtttatcgtgaagtaaatagtgttgttgattggtcaattggcaaacta |
319 |
Q |
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| T |
42068209 |
aaacatggaagtattgattggatcgtggttgagaggtctatgtgaagc--atgtttatcgtgaagtaaatagtgttgttgattggtcaattggcaaacta |
42068306 |
T |
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| Q |
320 |
tactcagaatcaatacta--ctctctatcttctatcacccctcaagtgggttgtatttttgtttgctcatgaag---ggagctcgggttccacgttgaat |
414 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
42068307 |
tactcagaatcaatactaccctctctatcttctatcacccctcaagtgggttgtatttttgtttgatcatgaagggaggagctcgggttccacgttgaat |
42068406 |
T |
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| Q |
415 |
caagggcaaccatataaatgatttaaacataatattttaacgtaaaatcttaatacattttgtatatgggtcatct |
490 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
42068407 |
caagggcaatcatataaatgagttaaacataatattttaacgtaaaatcttaagatattttgtatatgggtcatct |
42068482 |
T |
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