View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16666_low_5 (Length: 468)
Name: NF16666_low_5
Description: NF16666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16666_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 52408896 - 52409332
Alignment:
| Q |
20 |
gggattacattgctaagtaactatattccc----tgattttctcttttttaaatttactttaaaatatactatatgtttgctgaacaattgacgccaatc |
115 |
Q |
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| T |
52408896 |
gggattacattgctaagtaactatattccctccctgattttctcttttttaaatttactttaaaagatactatatgtttgctgaacaattgacgccaatc |
52408995 |
T |
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| Q |
116 |
ggtccatatcaattcagactcattgtatggacaaatttgacatatttactagtatttgtgaactgatactatatattcttaccgtttgattttggtgttg |
215 |
Q |
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| T |
52408996 |
ggtccatatcaattcagactcattgtatggacaaatttgacatatttactagtatttgtgaactgatactacatattcttaccgtttgattttggtgttg |
52409095 |
T |
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| Q |
216 |
tttcactaagctcaagtaattgtgaatttgacatttgtttgacttgtacttgtactttggaagcatcataatcagtgctattgcgattgctgagtataag |
315 |
Q |
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| T |
52409096 |
tttcactaagctcaagtaattgtgaatttgacatttgtttgacttgtacttgtactttggaagcatcataatcagtgctattgcgattgctgagtataag |
52409195 |
T |
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| Q |
316 |
atcagtttgattatgatgcgagtgtgatgaagttggcaatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409196 |
atcagtttgattatgatgcgagtgtgatgaagttggcaatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttg |
52409295 |
T |
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| Q |
416 |
gctggcagtggtgctgttcttatgatgttactctgtg |
452 |
Q |
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| T |
52409296 |
gctggcagtggtgctgttcttatgatgttactctgtg |
52409332 |
T |
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