View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16667_high_9 (Length: 215)
Name: NF16667_high_9
Description: NF16667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16667_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 4756821 - 4756638
Alignment:
| Q |
18 |
agaccaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatc |
117 |
Q |
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| T |
4756821 |
agactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatgatc |
4756722 |
T |
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| Q |
118 |
ttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4756721 |
ttttacctgtaaggaccatggttgaatgagggtatccaaccttgagattctcttcgtcggttagaaccttacgacatgtctctg |
4756638 |
T |
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