View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16667_low_1 (Length: 568)
Name: NF16667_low_1
Description: NF16667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16667_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 39839345 - 39839892
Alignment:
| Q |
1 |
atatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839345 |
atatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgc |
39839444 |
T |
|
| Q |
101 |
ttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839445 |
ttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcat |
39839544 |
T |
|
| Q |
201 |
catgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattcttttttaacttttgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839545 |
catgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattcttttttaacttttgtg |
39839644 |
T |
|
| Q |
301 |
nnnnnnnnnntctaattgggctgttctgnnnnnnnnatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttat |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839645 |
---aaaaaaatctaattgggctgttctgttttttttatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttat |
39839741 |
T |
|
| Q |
401 |
gatgttgaagtggttaccactttggattgtagacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggtatcaaaagacca |
500 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839742 |
gatgttgaagtggttaccactttggattgtggacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggtatcaaaagacca |
39839841 |
T |
|
| Q |
501 |
tcaatgggtccattgcagttgaagaacaccgtaggaaagacaccagttttg |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39839842 |
tcaatgggtccattgcagttgaagaacaccgtaggaaagacaccggttttg |
39839892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 39733613 - 39733066
Alignment:
| Q |
1 |
atatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733613 |
atatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggactttctgaattcaaaggtgaagttgtttatgc |
39733514 |
T |
|
| Q |
101 |
ttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733513 |
ttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaatcat |
39733414 |
T |
|
| Q |
201 |
catgctttaccttccatggttgttcgtagctcggtaggttccttttatgtgtctggtatctgtgtcagtgcttcatagtaattcttttttaacttttgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39733413 |
catgctttaccttccatggttgttcgtagctcggtaagttccttttatgtgtctggtatatgtgtcagtgcttcatagtaattcttttttaacttttgtg |
39733314 |
T |
|
| Q |
301 |
nnnnnnnnnntctaattgggctgttctgnnnnnnnnatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttat |
400 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733313 |
---aaaaaaatctaattgggctgttctgttttttttatccacaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttat |
39733217 |
T |
|
| Q |
401 |
gatgttgaagtggttaccactttggattgtagacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggtatcaaaagacca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733216 |
gatgttgaagtggttaccactttggattgtggacaaacttttgttgattttgacatggttcattttgggtgacatggaaaaatatggtatcaaaagacca |
39733117 |
T |
|
| Q |
501 |
tcaatgggtccattgcagttgaagaacaccgtaggaaagacaccagttttg |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
39733116 |
tcaatgggtccattgcagttgaagaacaccgtaggaaagacaccggttttg |
39733066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 31290573 - 31290622
Alignment:
| Q |
342 |
caggttcatgtgctaccaagagaaatatttggaatatcaacttttgaatt |
391 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31290573 |
caggctcatgtcttaccaagagaaatatttggaatatcaactcttgaatt |
31290622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29857673 - 29857435
Alignment:
| Q |
1 |
atatttgtaggtggcttgttgttgctaccggcgaaaatgctgagtgtgttactcctgaaattgaaggact---ttctgaattcaaaggtgaagttgttta |
97 |
Q |
| |
|
|||||||||||| |||||| |||||||| || || ||||| ||||||||| ||| | |||||||| | | ||||||||| |||||| || || | |
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| T |
29857673 |
atatttgtaggtcgcttgtggttgctactggtgagaatgcagagtgtgttgtgccttatattgaagggttaggtggtgaattcaagggtgaaattattca |
29857574 |
T |
|
| Q |
98 |
tgcttgtgattacaagtcagggaaaaattttgaaggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatcttagcaat |
197 |
Q |
| |
|
|||||||||||| || ||||| ||| |||| ||| ||||||||| | |||||||| ||||| ||||||||||||||||| || ||||||||| ||||| |
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|
| T |
29857573 |
tgcttgtgattataaatcaggtgaaagttttagagggaagaaagttttggttgttggttgtggtaattctggaatggaactttctcttgatctttgcaat |
29857474 |
T |
|
| Q |
198 |
catcatgctttaccttccatggttgttcgtagctcggta |
236 |
Q |
| |
|
||| |||| | |||||| || ||| |||||||||||||| |
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|
| T |
29857473 |
cataatgcatcaccttctattgttcttcgtagctcggta |
29857435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 17408116 - 17408175
Alignment:
| Q |
132 |
ggaaagaaagttcttgttgttggatgtggaaattctggaatggaactctcacttgatctt |
191 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||| | || ||||||||| |
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|
| T |
17408116 |
ggaaaaaatgttcttgttgttggatgtggaaattctggcatggaagtttctcttgatctt |
17408175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 341 - 452
Target Start/End: Complemental strand, 29857150 - 29857039
Alignment:
| Q |
341 |
acaggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggattgtagacaaactt |
440 |
Q |
| |
|
|||||||||||| | || |||||| | ||||| | |||||| |||| ||| || ||||||||| |||| ||||||||| ||||||| || ||||| || |
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|
| T |
29857150 |
acaggttcatgttttgcctagagaagtttttgggaaatcaacatttggattggcagttatgatgatgaaatggttaccagtttggatagttgacaagatt |
29857051 |
T |
|
| Q |
441 |
ttgttgattttg |
452 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29857050 |
ttgttgattttg |
29857039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17407985 - 17408021
Alignment:
| Q |
1 |
atatttgtaggtggcttgttgttgctaccggcgaaaa |
37 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
17407985 |
atatttgtaggtggcttgtggttgctaccggtgaaaa |
17408021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 427
Target Start/End: Original strand, 17408332 - 17408416
Alignment:
| Q |
343 |
aggttcatgtgctaccaagagaaatatttggaatatcaacttttgaattagcggttatgatgttgaagtggttaccactttggat |
427 |
Q |
| |
|
||||||||||| |||| || |||||||| |||| |||||||| ||| |||| |||||| || |||| |||||||| ||||||| |
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|
| T |
17408332 |
aggttcatgtgttaccgagggaaatattcggaaaatcaacttatgaggtagctgttatgttgatgaaaaggttaccaatttggat |
17408416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 19040219 - 19040190
Alignment:
| Q |
252 |
tctggtatctgtgtcagtgcttcatagtaa |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
19040219 |
tctggtatctgtgtcagtgcttcatagtaa |
19040190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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