View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16667_low_11 (Length: 224)
Name: NF16667_low_11
Description: NF16667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16667_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 17454614 - 17454427
Alignment:
| Q |
12 |
agcacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17454614 |
agcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaac |
17454515 |
T |
|
| Q |
112 |
attcaggtggagttggatcaactctatatggacaggtaatttgcaatagttacatatagtataaattacaatcattcttaaataaata |
199 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17454514 |
attcagggggagttggatcaactttatatggacaggtaatttgcaatagttacatatagtataaattacaatcattcttaaataaata |
17454427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 17433535 - 17433351
Alignment:
| Q |
12 |
agcacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
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|||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
17433535 |
agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac |
17433436 |
T |
|
| Q |
112 |
attcaggtggagttggatcaactctatatggacaggtaatttgcaatagttacatatagtataaatt-acaatcattcttaaata |
195 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
17433435 |
attcaggtggaactggatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaata |
17433351 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 38253372 - 38253236
Alignment:
| Q |
25 |
aggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaacattcaggtggagt |
124 |
Q |
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||||||||||||| ||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| | |
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| T |
38253372 |
aggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaat |
38253273 |
T |
|
| Q |
125 |
tggatcaactctatatggacaggtaatttgcaatagt |
161 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |
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| T |
38253272 |
tggatcaaccctatttggacaggtaatttgcaatagt |
38253236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 38214120 - 38213986
Alignment:
| Q |
31 |
gaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaacattcaggtggagttggatc |
130 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||| ||| ||||||| |
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|
| T |
38214120 |
gaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatc |
38214021 |
T |
|
| Q |
131 |
aactctatatggacaggtaatttgcaatagttaca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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|
| T |
38214020 |
aactctatatggacaggtaatttgcaatacttaca |
38213986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 38226517 - 38226372
Alignment:
| Q |
13 |
gcacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaaca |
112 |
Q |
| |
|
||||||||||| | || ||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| || |
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|
| T |
38226517 |
gcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagca |
38226418 |
T |
|
| Q |
113 |
ttcaggtggagttggatcaactctatatggacaggtaatttgcaat |
158 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||||| |||| |
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|
| T |
38226417 |
ttcaggtggaattggatcaactctatacgggcaggtaatttacaat |
38226372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 38243032 - 38242881
Alignment:
| Q |
12 |
agcacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||| | ||||| ||||| ||||||||||||| |||||| ||||| | |
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| T |
38243032 |
agcacagaccatagggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagc |
38242933 |
T |
|
| Q |
112 |
attcaggtggagttggatcaactctatatggacaggtaatttgcaatagtta |
163 |
Q |
| |
|
||||||||||| ||||||| || ||||||||||||||||||| ||||||||| |
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|
| T |
38242932 |
attcaggtggaattggatccaccctatatggacaggtaatttccaatagtta |
38242881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 38238057 - 38237919
Alignment:
| Q |
12 |
agcacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
|
|||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||||| ||||||||| || ||||||||||| |
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|
| T |
38238057 |
agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaac |
38237958 |
T |
|
| Q |
112 |
attcaggtggagttggatcaactctatatggacaggtaa |
150 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||| |
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| T |
38237957 |
attcaggcggaattggatcaactctatatggacaggtaa |
38237919 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 38220175 - 38220022
Alignment:
| Q |
14 |
cacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaacat |
113 |
Q |
| |
|
|||| ||||| |||| |||||||||||| ||||||||||||||| |||||||||| | ||||| ||||| ||||||||||||| |||||| ||||||||| |
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|
| T |
38220175 |
cacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacat |
38220076 |
T |
|
| Q |
114 |
tcaggtggagttggatcaactctatatggacaggtaatttgcaatagttacata |
167 |
Q |
| |
|
|| |||||| | ||||| || ||||||||||||||||||| ||||||||||||| |
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|
| T |
38220075 |
tcgggtggaatcggatccaccctatatggacaggtaatttccaatagttacata |
38220022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 38248232 - 38248174
Alignment:
| Q |
12 |
agcacagaccatgaggagggaaatggttgtattcatgtgaagaggacaagtctcccact |
70 |
Q |
| |
|
|||||||| || ||||||||||||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
38248232 |
agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccact |
38248174 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 11473513 - 11473615
Alignment:
| Q |
46 |
atgtgaagaggacaagtctcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaacattcaggtggagttggatcaactctatatggaca |
145 |
Q |
| |
|
|||| ||||| ||||| ||||| |||||| ||||| ||| | ||||||| |||| ||||||||||||||||| | |||||||||||||||||||| | |
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|
| T |
11473513 |
atgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactctatatggaaa |
11473612 |
T |
|
| Q |
146 |
ggt |
148 |
Q |
| |
|
||| |
|
|
| T |
11473613 |
ggt |
11473615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 11485802 - 11485886
Alignment:
| Q |
64 |
tcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaacattcaggtggagttggatcaactctatatggacaggt |
148 |
Q |
| |
|
||||| |||||| ||||| ||||| ||||||| |||| |||||| |||||||||| | |||||||||||||||||||| |||| |
|
|
| T |
11485802 |
tcccaatgcaaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaactctatatggaaaggt |
11485886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 11479708 - 11479792
Alignment:
| Q |
64 |
tcccactgcaaaccggtggctatgtgatctatgctgttgctcatcaacattcaggtggagttggatcaactctatatggacaggt |
148 |
Q |
| |
|
||||| |||||| ||| || ||||| || |||| |||| ||||| |||||||||| | ||||||||||||||||||||||||| |
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|
| T |
11479708 |
tcccaatgcaaaacggcggttatgtcatatatggagttggccatcagcattcaggtgcaattggatcaactctatatggacaggt |
11479792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 21547341 - 21547405
Alignment:
| Q |
84 |
tatgtgatctatgctgttgctcatcaacattcaggtggagttggatcaactctatatggacaggt |
148 |
Q |
| |
|
||||| ||||||| |||| ||||| ||| |||||| | ||||||||||||||||||||||||| |
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|
| T |
21547341 |
tatgtcatctatggagttggtcatctacacacaggtgcaattggatcaactctatatggacaggt |
21547405 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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