View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16667_low_5 (Length: 250)
Name: NF16667_low_5
Description: NF16667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16667_low_5 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0983 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 29255734 - 29255975
Alignment:
| Q |
9 |
gagaagaagatggtagcagaaattttgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggtacatatgtg |
108 |
Q |
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| T |
29255734 |
gagaagaagatggtagcagaaattttgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaatttatataataaggagaggtatatatgtg |
29255833 |
T |
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| Q |
109 |
acnnnnnnnnatctcaaccgtctatttttaatctaatagtccataagatatgtcatgtgtgtgtgtcgttaaccattgtgttgagctcacattgttaatg |
208 |
Q |
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| T |
29255834 |
acttttttttatctcaaccgtctatttttaatctaatagtccataagatatgtcatgtgtgtgtgtcgttaaccattgtgttgagctcacattgttaatg |
29255933 |
T |
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| Q |
209 |
agttttagtttaaaggatgaactgatcaagagcactcgagtt |
250 |
Q |
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| T |
29255934 |
agtttcagtttaaaggatgaactgatcaagagcactcgagtt |
29255975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 7725555 - 7725631
Alignment:
| Q |
34 |
tgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggtacatatgtgac |
110 |
Q |
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| T |
7725555 |
tgattgtggggagaagaagatgaaaagggaaatgaatttatgagaattgatataataaagtgaggtgcatatgtgac |
7725631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 3803255 - 3803164
Alignment:
| Q |
19 |
tggtagcagaaattttgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggtacatatgtgac |
110 |
Q |
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| T |
3803255 |
tggtagcacaaatcttgattgtggggagaagtagatgaaaagggaaatgagtttatgagaattgatataataaggtgaggtacatatgtgac |
3803164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 30610155 - 30610238
Alignment:
| Q |
16 |
agatggtagcagaaattttgattgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggtaca |
102 |
Q |
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| T |
30610155 |
agatggtagcaaaaattctgattgtggggagaaga---tgaaaaaggaaatgagtttatgataattgatataataaggtgaggtaca |
30610238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0983 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0983
Description:
Target: scaffold0983; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 1844 - 1916
Alignment:
| Q |
36 |
attgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggtacatatgtg |
108 |
Q |
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| T |
1844 |
attgtggagagaagaagataaaaaaggaaatgagtttatgagaattgatataataaggtgaggtgcatatgtg |
1916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 1825431 - 1825492
Alignment:
| Q |
39 |
gtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggta |
100 |
Q |
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| T |
1825431 |
gtggggagaagaagatgaaaaaggaaatgagtttatgagaattgatctaataaggtgaggta |
1825492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 11698059 - 11698123
Alignment:
| Q |
45 |
agaagaacatgaaaaagtaaatgagtttatgtgaattgatataatatggagaggtacatatgtga |
109 |
Q |
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| T |
11698059 |
agaagaaaatgaaaatggaaatgagtttatgagaattgatgtaataagttgaggtacataggtga |
11698123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 47362668 - 47362720
Alignment:
| Q |
38 |
tgtgggaagaagaacatgaaaaagtaaatgagtttatgtgaattgatataata |
90 |
Q |
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| T |
47362668 |
tgtggggagaagaagatgaaaagggaaatgagtttatgagaattgatgtaata |
47362720 |
T |
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