View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16667_low_8 (Length: 239)
Name: NF16667_low_8
Description: NF16667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16667_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 41247791 - 41247571
Alignment:
| Q |
19 |
tctgctaccacccattcacaaatatgcaggagttattgctacccttcttctgcatgggtgtgcgtttcattaaaattcatatatacaccctcactttaca |
118 |
Q |
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| T |
41247791 |
tctgctaccacccattcacaaatatgcaggagttattgctacccttcttctgcatgggtgtgcgtttcattaaaattcatatatacaccctcactttaca |
41247692 |
T |
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| Q |
119 |
actttttcaatttttctcatttatgtttcttcgaatacgtccannnnnnncctaccatacataaattttcacatttaccaccctcaacaaccaaccaacc |
218 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41247691 |
acttcttcaatttttctcatttatgtttcttcgaatacgtccattttttccctaccatacataaattttcacatttaccaccctcaacaaccaaccaacc |
41247592 |
T |
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| Q |
219 |
ctcactgtctctaaatttcac |
239 |
Q |
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| T |
41247591 |
ctcactgtctctaaatttcac |
41247571 |
T |
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