View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16667_low_9 (Length: 230)
Name: NF16667_low_9
Description: NF16667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16667_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 41247277 - 41247496
Alignment:
| Q |
12 |
tattacaaaacaattaa-ggcagataaaaatatatatgaattgtccacaccacttgatttcatatgcatgttatgagaatatatgaaaaaagtttaaaaa |
110 |
Q |
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| T |
41247277 |
tattacaaaacaattaaaggcagataaaaatatatatgaattgtccacaccacttgatttcatatgcatgttatgagaatatacgaaaaaagtttaaaaa |
41247376 |
T |
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| Q |
111 |
gtagccgatttgaaacaacctaagaacccgccgaagtttttaaatagcatgtcctacaataagatgaatgtgctgttaaactcatcacactattcaatat |
210 |
Q |
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| T |
41247377 |
gtagccgatttgaaacaacctaagaacccgccgaagtttttaaatagcatgtcctacaataagatgaatgtgctgttaaactcatcacactattcaatat |
41247476 |
T |
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| Q |
211 |
atactaccaaatattaaact |
230 |
Q |
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|||||||||||||||||||| |
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| T |
41247477 |
atactaccaaatattaaact |
41247496 |
T |
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