View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_high_10 (Length: 465)
Name: NF16668_high_10
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 29052891 - 29053162
Alignment:
| Q |
17 |
gaacatctaagagacttggttggaataccaaagtggaaagggtgcaaagcttgaacacataatattcatcataaatcatacttaaacatatatgtttcaa |
116 |
Q |
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| T |
29052891 |
gaacatctaagagacttggttggaataccaaagtggacagggtgcaaagcttgaacacataatattcatcattattcatacttaaacatgtatgtttaaa |
29052990 |
T |
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| Q |
117 |
aattcacatgaaaacggtct--caactaccaagttttcccctcgttaagatgactttcatgtatttaatcacaaaagatgaagnnnnnnntatcagcaag |
214 |
Q |
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| T |
29052991 |
aattcacatgaaaacggtctcacaactaccaagttttcccctcgttaagatgactttcatgtatttaatcacaaaagatgaagaaaaaaatatcagcaag |
29053090 |
T |
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| Q |
215 |
ggttctgaagcataaataaaaggaccacattttcattcaagtcttaaaatgcttatataagacataaattta |
286 |
Q |
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| T |
29053091 |
ggttctgaagcataaataaaaggaccacattttcattcaagtcttaaaatgcttatataagacataaattta |
29053162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 285 - 435
Target Start/End: Original strand, 29053446 - 29053596
Alignment:
| Q |
285 |
tattgagttagactaacatgaaaagaagaaaacattaggaatgatattgaaaaggtacataatatcttctgccaagcatgatattgtgatgaagtagtgt |
384 |
Q |
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| T |
29053446 |
tattgagttagactaacatgaaaagaagaaaacactaggaatgatattgaaaaggtacataatatcttctgccaagcatgatattgtgatgaagcagtgt |
29053545 |
T |
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| Q |
385 |
tcatagtttttgcatacaaacttgtacgaagacaacactaacaatgactat |
435 |
Q |
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| T |
29053546 |
tcatagtttttgcatacaaacttgtacgaagacaacactaacaatgactat |
29053596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 29057692 - 29057737
Alignment:
| Q |
238 |
accacattttcattcaagtcttaaaatgcttatataagacataaat |
283 |
Q |
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| T |
29057692 |
accacattttcatgcaagtcttaaaatgcttatattagacataaat |
29057737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 29057580 - 29057608
Alignment:
| Q |
169 |
tttcatgtatttaatcacaaaagatgaag |
197 |
Q |
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| T |
29057580 |
tttcatgtatttaatcacaaaagatgaag |
29057608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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