View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_high_13 (Length: 423)
Name: NF16668_high_13
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 36331659 - 36332071
Alignment:
| Q |
1 |
tgccaaaataatcctaagcatgattccaatattctgctgcacaatcataatgactctttgcttagcacagcttcaaaccttctcagtccagcaaggcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36331659 |
tgccaaaataatcctaagcatgattccaatattctgttgcacaatcataatgactctttgcttagcacagcttcaaaccttctcagtccaacaaggcttc |
36331758 |
T |
|
| Q |
101 |
acaatggacacaagaattaccaaacatttcaacatcccaccaccatccttgccaatcatcccaattggtttcttagtcattatcatccctgtctacgacc |
200 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331759 |
acaatggacacaagaatcaccaaacatttcaacatcccaccaccatccttgccaatcatcccaattggtttcttagtcattatcatccctgtctacgacc |
36331858 |
T |
|
| Q |
201 |
gaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcataggtgtcggcctaatactatcctgcatctcgat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331859 |
gaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcataggtgtcggcctaatactatcctgcatctcgat |
36331958 |
T |
|
| Q |
301 |
ggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtata |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331959 |
ggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtata |
36332058 |
T |
|
| Q |
401 |
ttttggctttctt |
413 |
Q |
| |
|
||||||||||||| |
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|
| T |
36332059 |
ttttggctttctt |
36332071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 36324398 - 36324810
Alignment:
| Q |
1 |
tgccaaaataatcctaagcatgattccaatattctgctgcacaatcataatgactctttgcttagcacagcttcaaaccttctcagtccagcaaggcttc |
100 |
Q |
| |
|
|||||||||| | ||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
36324398 |
tgccaaaatatttctaagcatgatcccagtattcttctgtacaatcataatgactctttgcttagcacagcttcaaaccttttcagtccaacaaggcttc |
36324497 |
T |
|
| Q |
101 |
acaatggacacaagaattaccaaacatttcaacatcccaccaccatccttgccaatcatcccaattggtttcttagtcattatcatccctgtctacgacc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||| || |||| |||||| ||||||||| |
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| T |
36324498 |
acaatggacacaagaatcaccaaacatttcaacatcccaccagcatccttaccaatcatcccagttgttttcttaatctttataatccctttctacgacc |
36324597 |
T |
|
| Q |
201 |
gaatatgcgtgccagttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcataggtgtcggcctaatactatcctgcatctcgat |
300 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||| |||||||||||||| | || ||| ||||||| ||||| || |||||||||||||||||||||||||| |
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|
| T |
36324598 |
gaatctgcgtgccacttctccgtaaattcactggcataccaaccggcattactcacttgcagcgaataggcgttggcctaatactatcctgcatctcgat |
36324697 |
T |
|
| Q |
301 |
ggcaattgcagcaatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtata |
400 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36324698 |
ggcaatcgcggcaatcatagaagtgaaaagaaaaaatgtagctagagataataacatgcttgatgctgttccaggagttcaaccattacctttgagtata |
36324797 |
T |
|
| Q |
401 |
ttttggctttctt |
413 |
Q |
| |
|
||||||||||||| |
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|
| T |
36324798 |
ttttggctttctt |
36324810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 5459676 - 5460072
Alignment:
| Q |
17 |
agcatgattccaatattctgctgcacaatcataatgactctttgcttagcacagcttcaaaccttctcagtccagcaaggcttcacaatggacacaagaa |
116 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||||||| |||||| |||| || || |||||||| ||| || | ||||||| ||| |||||||||| | |
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|
| T |
5459676 |
agcatggttccaatattctgttgtacaattataatgaccctttgcctagctcaactccaaaccttttcaatcgaacaaggctacaccatggacacaaaag |
5459775 |
T |
|
| Q |
117 |
ttaccaaacatttcaacatcccaccaccatccttgccaatcatcccaattggtttcttagtcattatcatccctgtctacgaccgaatatgcgtgccagt |
216 |
Q |
| |
|
| ||||||||||| |||||||||| ||||| | ||| |||||||||| |||||| ||||| || | ||| |||||||||| || | ||| || || |
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|
| T |
5459776 |
tcaccaaacattttcacatcccacccgcatccctcccattcatcccaatcatgttcttaatcattctcgtacctatctacgaccgcattttcgttcctgt |
5459875 |
T |
|
| Q |
217 |
tcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcataggtgtcggcctaatactatcctgcatctcgatggcaattgcagcaatc |
316 |
Q |
| |
|
| | |||||||||||||| || |||||||| || || ||| |||| || |||||||| || || ||||| | | | | || ||||| | || |||| |
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|
| T |
5459876 |
tatacgtaaattcaccggtattccaaccggtgttacacacttgcaacgtataggtgttggtcttatacttgcttccgtatcaatggctgtcgcttcaatt |
5459975 |
T |
|
| Q |
317 |
atagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttctt |
413 |
Q |
| |
|
|||||||| |||||||||| || || | ||||||||||||||||||||| | |||| | ||| ||||| ||| | || | |||||||||||||| |
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|
| T |
5459976 |
atagaagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagcacattttggctttctt |
5460072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 45660986 - 45661043
Alignment:
| Q |
39 |
gcacaatcataatgactctttgcttagcacagcttcaaaccttctcagtccagcaagg |
96 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||| |
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|
| T |
45660986 |
gcacaatcataatgaacacttgtttagcacagcttcaaacattctcagtacagcaagg |
45661043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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