View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_high_17 (Length: 416)

Name: NF16668_high_17
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_high_17
NF16668_high_17
[»] chr8 (8 HSPs)
chr8 (26-398)||(18529642-18530016)
chr8 (302-392)||(18535087-18535177)
chr8 (174-210)||(30213932-30213968)
chr8 (167-277)||(27137841-27137951)
chr8 (96-141)||(27137733-27137778)
chr8 (96-142)||(20049786-20049832)
chr8 (97-133)||(14547738-14547774)
chr8 (94-126)||(15598279-15598311)
[»] chr1 (3 HSPs)
chr1 (174-284)||(26858607-26858717)
chr1 (78-116)||(40817736-40817774)
chr1 (181-210)||(21721490-21721519)
[»] chr4 (11 HSPs)
chr4 (174-287)||(14116424-14116537)
chr4 (244-327)||(21546118-21546201)
chr4 (174-259)||(13929430-13929515)
chr4 (181-290)||(11442085-11442194)
chr4 (181-290)||(11551501-11551610)
chr4 (95-140)||(11011616-11011661)
chr4 (79-134)||(17133383-17133436)
chr4 (44-100)||(18949797-18949853)
chr4 (278-328)||(39938287-39938337)
chr4 (244-312)||(6115863-6115930)
chr4 (174-285)||(8189728-8189837)
[»] chr2 (6 HSPs)
chr2 (174-289)||(25907951-25908066)
chr2 (276-356)||(21539030-21539110)
chr2 (174-290)||(19693385-19693501)
chr2 (177-289)||(12845697-12845809)
chr2 (181-220)||(13892217-13892256)
chr2 (181-220)||(14032342-14032381)
[»] chr3 (5 HSPs)
chr3 (168-290)||(9829498-9829618)
chr3 (97-142)||(27685549-27685594)
chr3 (181-210)||(12759109-12759138)
chr3 (78-126)||(17769651-17769699)
chr3 (78-126)||(19070952-19071000)
[»] chr5 (3 HSPs)
chr5 (174-290)||(19761265-19761381)
chr5 (244-393)||(25954804-25954952)
chr5 (228-290)||(17246011-17246073)
[»] scaffold0425 (1 HSPs)
scaffold0425 (227-290)||(2544-2607)
[»] chr7 (8 HSPs)
chr7 (281-339)||(4514405-4514463)
chr7 (277-358)||(23182846-23182928)
chr7 (174-290)||(7145248-7145364)
chr7 (174-210)||(26454143-26454179)
chr7 (96-142)||(12223081-12223126)
chr7 (182-210)||(4031835-4031863)
chr7 (43-127)||(4514645-4514729)
chr7 (272-328)||(21633734-21633790)
[»] scaffold0669 (1 HSPs)
scaffold0669 (168-312)||(4393-4534)
[»] chr6 (2 HSPs)
chr6 (74-141)||(4098234-4098297)
chr6 (73-126)||(12870654-12870706)
[»] scaffold0008 (2 HSPs)
scaffold0008 (79-142)||(9838-9900)
scaffold0008 (79-142)||(20231-20293)
[»] scaffold1339 (1 HSPs)
scaffold1339 (94-126)||(1723-1755)
[»] scaffold0105 (1 HSPs)
scaffold0105 (174-285)||(16303-16412)


Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 26 - 398
Target Start/End: Original strand, 18529642 - 18530016
Alignment:
Q  26 aacacaacattttatcct-gttcaccccacaatctgaggttacatccggttcctttgcactttcaatgaattttttaactataatcacacaagattacaa 124  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  18529642 aacacaacattttatcctagttcaccccacaatcagaggttacatccagttcctttgcactttcaatgaattttttcactataatcacacaagattataa 18529741  T
Q  125 tttgctcaaatacacaagattataatttgctcaaatacacagtaaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataac 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  18529742 tttgctcaaatacacaagattataatttgctcaaatacacagtaaaagggattgtgtttacacttgatatacagttagaggtgtaactaacttaaagaac 18529841  T
Q  225 aaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttg 324  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18529842 aaatgacttctaaacacttgagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttg 18529941  T
Q  325 taaattgttcgaagtgttgtgtgttcttcaaactactaaagtccttaaacatgagagaaataa-tagagcaggta 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18529942 taaattgttcgaagtgttgtgtgttcttcaaactactaaagtccttaaacatgagagaaataattagagcaggta 18530016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 392
Target Start/End: Original strand, 18535087 - 18535177
Alignment:
Q  302 atttgacagagattttgctcttgtaaattgttcgaagtgttgtgtgttcttcaaactactaaagtccttaaacatgagagaaataatagag 392  Q
    |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||   ||  ||||||  ||||||||||||||||    
T  18535087 atttgatagagatttggctcttgtaaattgttcgaagtgttgtatgttcttcaaactactcgggttgttaaaccggagagaaataatagag 18535177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 30213932 - 30213968
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaa 210  Q
    |||||||||||||||||||||||||||||||||||||    
T  30213932 gattgtgtttacacttgatatacaattagaggtgtaa 30213968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 277
Target Start/End: Original strand, 27137841 - 27137951
Alignment:
Q  167 taaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtt 266  Q
    |||||| |||||| |||||| |||||||||||  | ||||||||  || |||||    |||||||||||||| ||| |||| ||||||||||| |||| |    
T  27137841 taaaagagattgtttttacatttgatatacaaccaaaggtgtaagaaagttaaagtgaaaatgacttctaaatacttaagaaattctaagattgaaagct 27137940  T
Q  267 tgtacgaattt 277  Q
    |||| ||||||    
T  27137941 tgtaagaattt 27137951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 27137733 - 27137778
Alignment:
Q  96 tttttaactataatcacacaagattacaatttgctcaaatacacaa 141  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||    
T  27137733 tttttcactatagtcacacaagattacaatttgctcaaacacacaa 27137778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 20049832 - 20049786
Alignment:
Q  96 tttttaactataatcacacaagattacaatttgctcaaatacacaag 142  Q
    ||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  20049832 tttttcactataatctcacaatattacaatttgctcaaacacacaag 20049786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 14547738 - 14547774
Alignment:
Q  97 ttttaactataatcacacaagattacaatttgctcaa 133  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  14547738 tttttactataatcacacaagattacaattcgctcaa 14547774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 15598279 - 15598311
Alignment:
Q  94 attttttaactataatcacacaagattacaatt 126  Q
    ||||||| |||||||||||||||||||||||||    
T  15598279 atttttttactataatcacacaagattacaatt 15598311  T

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Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 26858717 - 26858607
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    |||||| ||||||||||||||||||||||| || ||| |||||||||   ||| ||||||||||||||| |||| ||||||||||| |||||||||| ||    
T  26858717 gattgtttttacacttgatatacaattagaagtataattaacttaaagtgcaagtgacttctaaacacttaagaaattctaagattaaaagtttgtaaga 26858618  T
Q  274 atttttctaag 284  Q
    |||||||||||    
T  26858617 atttttctaag 26858607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 40817774 - 40817736
Alignment:
Q  78 tttgcactttcaatgaattttttaactataatcacacaa 116  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  40817774 tttgcacttccaatgaattttttcactataatcacacaa 40817736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 21721519 - 21721490
Alignment:
Q  181 tttacacttgatatacaattagaggtgtaa 210  Q
    ||||||||||||||||||||||||||||||    
T  21721519 tttacacttgatatacaattagaggtgtaa 21721490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 14116424 - 14116537
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    ||||||| |||||||||||||||||| ||||||||||  ||||||||  | || ||||||||||||||| || | ||||||||||| |||||||||| ||    
T  14116424 gattgtgcttacacttgatatacaatcagaggtgtaataaacttaaagtataagtgacttctaaacacttaaaaaattctaagattgaaagtttgtaaga 14116523  T
Q  274 atttttctaagtgt 287  Q
    |||||| |||||||    
T  14116524 atttttttaagtgt 14116537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 21546201 - 21546118
Alignment:
Q  244 aagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaa 327  Q
    |||| ||||||||||   ||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||| || |||||||    
T  21546201 aagaaattctaagatactaagtttgtaagaatttttttaagtgtttgaatacttttgaatttgacagagttttagcacttgtaa 21546118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 13929515 - 13929430
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatt 259  Q
    ||||||||||| |||||||||||||| |||||||||| ||||||||| |  ||  ||||||| |||||| |||| |||||||||||    
T  13929515 gattgtgtttatacttgatatacaatcagaggtgtaagtaacttaaagagaaagcgacttctgaacacttaagaaattctaagatt 13929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 290
Target Start/End: Original strand, 11442085 - 11442194
Alignment:
Q  181 tttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttc 280  Q
    |||| |||||||||||||| |||||| |||  ||| ||||   ||| |||||||| |||||| || | |||||||| || |||||||||| |||||||||    
T  11442085 tttaaacttgatatacaatcagaggtataaaaaacctaaagtgcaagtgacttctgaacacttaaaaaattctaaggttcaaagtttgtaagaatttttc 11442184  T
Q  281 taagtgtttg 290  Q
    ||||| ||||    
T  11442185 taagtatttg 11442194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 290
Target Start/End: Complemental strand, 11551610 - 11551501
Alignment:
Q  181 tttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttc 280  Q
    |||| |||||||||||||| |||||| |||  ||| ||||   ||| |||||||| |||||| || | |||||||| || |||||||||| |||||||||    
T  11551610 tttaaacttgatatacaatcagaggtataaaaaacctaaagtgcaagtgacttctgaacacttaaaaaattctaaggttcaaagtttgtaagaatttttc 11551511  T
Q  281 taagtgtttg 290  Q
    ||||| ||||    
T  11551510 taagtatttg 11551501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 11011661 - 11011616
Alignment:
Q  95 ttttttaactataatcacacaagattacaatttgctcaaatacaca 140  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||    
T  11011661 tttttttactataatcacacaagattacaattttctcaaacacaca 11011616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 17133383 - 17133436
Alignment:
Q  79 ttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaa 134  Q
    ||||||||||||||||||||   ||| |||||||||||||||||||||| ||||||    
T  17133383 ttgcactttcaatgaattttc--actgtaatcacacaagattacaatttactcaaa 17133436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 18949797 - 18949853
Alignment:
Q  44 gttcaccccacaatctgaggttacatccggttcctttgcactttcaatgaatttttt 100  Q
    |||||||||| || | ||| |||| ||| ||||||||||||||||||||||||||||    
T  18949797 gttcaccccataacccgagattacttccagttcctttgcactttcaatgaatttttt 18949853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 39938287 - 39938337
Alignment:
Q  278 ttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaa 328  Q
    |||||||||||||||   |||||||||||||| |||||| |||||||||||    
T  39938287 ttctaagtgtttgaatgattttgaatttgacatagatttggctcttgtaaa 39938337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 6115863 - 6115930
Alignment:
Q  244 aagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagag 312  Q
    |||| |||||||||| ||||||| ||| ||||||| |||||||||||    ||||||||||||||||||    
T  6115863 aagaaattctaagatctaaagttggtaagaatttt-ctaagtgtttgtgcgcttttgaatttgacagag 6115930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 8189728 - 8189837
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    ||||||||| ||||||||||  |||| | | ||||||  ||||||||   ||| |||||| | |||||| |||| ||| | |||||||||||||| | ||    
T  8189728 gattgtgttgacacttgata--caatcatatgtgtaagaaacttaaagtgcaagtgacttatgaacacttaagaaattatgagatttaaagtttggaaga 8189825  T
Q  274 atttttctaagt 285  Q
    ||||||||||||    
T  8189826 atttttctaagt 8189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 25908066 - 25907951
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    |||||||||||||||||||||| ||| |||||||||| ||||||||     || ||||||| ||||||| |||| ||||||||||| ||||||| || ||    
T  25908066 gattgtgtttacacttgatatagaataagaggtgtaagtaacttaatgtgtaagtgacttccaaacacttaagaaattctaagattaaaagtttttaaga 25907967  T
Q  274 atttttctaagtgttt 289  Q
    |||||| |||||||||    
T  25907966 atttttgtaagtgttt 25907951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 276 - 356
Target Start/End: Complemental strand, 21539110 - 21539030
Alignment:
Q  276 ttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaattgttcgaagtgttgtgtgttcttcaaa 356  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||  | |||||||||    
T  21539110 ttttctaagtgttttaagacttttgaatttgacagaggtttggctattgtaaattgttcaaagtgttgcatattcttcaaa 21539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 19693501 - 19693385
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    ||||||||||||| |||||||||||| ||||||||||  ||||||||   ||| |||||||  |  | | |||| ||||||||||| ||||||||||| |    
T  19693501 gattgtgtttacatttgatatacaatcagaggtgtaaaaaacttaaagtgcaagtgacttcatattaattaagaaattctaagattgaaagtttgtacaa 19693402  T
Q  274 atttttctaagtgtttg 290  Q
    |||| ||||||| ||||    
T  19693401 atttctctaagtatttg 19693385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 289
Target Start/End: Complemental strand, 12845809 - 12845697
Alignment:
Q  177 tgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacgaatt 276  Q
    |||||||||| |||||||||||| | ||||||||  |  || ||   ||| |||||| | |||||| |||| ||||||||||| |||  ||||| |||||    
T  12845809 tgtgtttacagttgatatacaatcaaaggtgtaaacatgttcaagtgcaagtgacttatgaacacttaagaaattctaagattgaaaacttgtaagaatt 12845710  T
Q  277 tttctaagtgttt 289  Q
    |||||||||||||    
T  12845709 tttctaagtgttt 12845697  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 13892217 - 13892256
Alignment:
Q  181 tttacacttgatatacaattagaggtgtaactaacttaaa 220  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  13892217 tttacacttgatatacaattagaggtgtaagaaacttaaa 13892256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 14032342 - 14032381
Alignment:
Q  181 tttacacttgatatacaattagaggtgtaactaacttaaa 220  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  14032342 tttacacttgatatacaattagaggtgtaagaaacttaaa 14032381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 9829618 - 9829498
Alignment:
Q  168 aaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagttt 267  Q
    ||||| |||||||||||||||||||||||||||||||||||||  || |||| |    |||||||||| || ||| |||| |||||||||| | || |||    
T  9829618 aaaagagattgtgtttacacttgatatacaattagaggtgtaataaatttaagt--tcaatgacttctgaatacttaagaaattctaagatatgaaattt 9829521  T
Q  268 gtacgaatttttctaagtgtttg 290  Q
    ||| |||||| ||||||||||||    
T  9829520 gtaagaatttctctaagtgtttg 9829498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 27685549 - 27685594
Alignment:
Q  97 ttttaactataatcacacaagattacaatttgctcaaatacacaag 142  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||    
T  27685549 ttttcactataatcacacaggattacaatttgctcaaacacacaag 27685594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 210
Target Start/End: Original strand, 12759109 - 12759138
Alignment:
Q  181 tttacacttgatatacaattagaggtgtaa 210  Q
    ||||||||||||||||||||||||||||||    
T  12759109 tttacacttgatatacaattagaggtgtaa 12759138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 17769699 - 17769651
Alignment:
Q  78 tttgcactttcaatgaattttttaactataatcacacaagattacaatt 126  Q
    ||||||||| ||| ||  ||||| |||||||||||||||||||||||||    
T  17769699 tttgcacttccaaggagatttttcactataatcacacaagattacaatt 17769651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 19071000 - 19070952
Alignment:
Q  78 tttgcactttcaatgaattttttaactataatcacacaagattacaatt 126  Q
    ||||||||| ||| ||  ||||| |||||||||||||||||||||||||    
T  19071000 tttgcacttccaaggagatttttcactataatcacacaagattacaatt 19070952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 19761265 - 19761381
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    |||||||||||||||||||||||||| ||| |||||| ||||| |||   ||| ||||||||||| ||| |||| ||| ||||||| || ||||||| ||    
T  19761265 gattgtgtttacacttgatatacaatcagaagtgtaattaactcaaagttcaagtgacttctaaagacttaagaaattttaagattgaatgtttgtaaga 19761364  T
Q  274 atttttctaagtgtttg 290  Q
      |||| ||||||||||    
T  19761365 tattttataagtgtttg 19761381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 393
Target Start/End: Complemental strand, 25954952 - 25954804
Alignment:
Q  244 aagatattctaagatttaaagtttgtacgaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaattgttcgaagtgttg 343  Q
    |||| |||||||||| ||||||||||| ||| |||||||||||||||   |||||| |||||||||||| |||  | |||||||| | |  ||||| |      
T  25954952 aagaaattctaagatataaagtttgtaagaa-ttttctaagtgtttgtgcacttttaaatttgacagagttttgacacttgtaaaatatgtgaagtctca 25954854  T
Q  344 tgtgttcttcaaactactaaagtccttaaacatgagagaaataatagagc 393  Q
    |  |||||||||||| || | ||||||| | | ||||||||||| |||||    
T  25954853 taagttcttcaaacttctcatgtccttatataggagagaaataagagagc 25954804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 17246011 - 17246073
Alignment:
Q  228 tgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttctaagtgtttg 290  Q
    |||||| | |||||| |||| |||||| |||| ||||||| || |||||||||||||||||||    
T  17246011 tgacttatgaacacttaagaaattctatgattgaaagtttataagaatttttctaagtgtttg 17246073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 2544 - 2607
Alignment:
Q  227 atgacttctaaacactaaagatattctaagatttaaagtttgtacgaatttttctaagtgtttg 290  Q
    ||||||||| ||||||  ||||||||||||||| |||||||||| |||||| ||||||||||||    
T  2544 atgacttctgaacacttgagatattctaagattgaaagtttgtaagaatttctctaagtgtttg 2607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 4514463 - 4514405
Alignment:
Q  281 taagtgtttgaagacttttgaatttgacagagattttgctcttgtaaattgttcgaagt 339  Q
    ||||||||||||| |||||||||||||||||| ||  | ||||||||||||||||||||    
T  4514463 taagtgtttgaaggcttttgaatttgacagaggttggggtcttgtaaattgttcgaagt 4514405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 358
Target Start/End: Original strand, 23182846 - 23182928
Alignment:
Q  277 tttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaa-ttgttcgaagtgttgtgtgttcttcaaact 358  Q
    ||||||||||||||||| |||||||||||||||||| |||  ||||| |||| || ||| ||||||| ||| |||||||||||    
T  23182846 tttctaagtgtttgaaggcttttgaatttgacagaggtttgactcttataaattttttcaaagtgttatgtattcttcaaact 23182928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 7145364 - 7145248
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    |||| |||||||||||||| |||||| | |||||||| |||||||||   ||  | | || | ||||||||||| ||||||||||| ||| | |||| |     
T  7145364 gattatgtttacacttgatttacaatcataggtgtaattaacttaaagtgcatgtaattttttaacactaaagaaattctaagattgaaactctgtaagc 7145265  T
Q  274 atttttctaagtgtttg 290  Q
    |||||||||||||||||    
T  7145264 atttttctaagtgtttg 7145248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 26454179 - 26454143
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaa 210  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26454179 gattgtgtttacacttgatatacaatcagaggtgtaa 26454143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 12223126 - 12223081
Alignment:
Q  96 tttttaactataatcacacaagattacaatttgctcaaatacacaag 142  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  12223126 tttttcactataatcacacaagattacaa-ttgctcaaacacacaag 12223081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 4031863 - 4031835
Alignment:
Q  182 ttacacttgatatacaattagaggtgtaa 210  Q
    |||||||||||||||||||||||||||||    
T  4031863 ttacacttgatatacaattagaggtgtaa 4031835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 4514729 - 4514645
Alignment:
Q  43 tgttcaccccacaatctgaggttacatccggttcctttgcactttcaatgaattttttaactataatcacacaagattacaattt 127  Q
    |||||||||||||||| |||||| ||||| ||  | ||| |||| |||   ||||||  ||||||||||||||||||| ||||||    
T  4514729 tgttcaccccacaatccgaggttgcatccagtctccttgaacttccaagagatttttccactataatcacacaagattgcaattt 4514645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 21633790 - 21633734
Alignment:
Q  272 gaatttttctaagtgtttgaagacttttgaatttgacagagattttgctcttgtaaa 328  Q
    ||||||||||| ||||| |||  |||||||||||||||||| |||  ||||||||||    
T  21633790 gaatttttctaggtgttcgaatgcttttgaatttgacagagttttgactcttgtaaa 21633734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0669 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 312
Target Start/End: Original strand, 4393 - 4534
Alignment:
Q  168 aaaagggattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagttt 267  Q
    ||||| |||||  |||||| |||||||||||| | | ||| |  ||||||||| ||||| ||||||   |||| | |||| |||||||||||  ||||||    
T  4393 aaaagagattgattttacagttgatatacaatcaaatgtgcatttaacttaaagaacaagtgactt---aacaattaagaaattctaagattgtaagttt 4489  T
Q  268 gtacgaatttttctaagtgtttgaagacttttgaatttgacagag 312  Q
    |||| ||| ||||||||||||||   |||||| ||||||| ||||    
T  4490 gtactaatatttctaagtgtttgtgcactttttaatttgagagag 4534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 4098297 - 4098234
Alignment:
Q  74 ttcctttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaatacacaa 141  Q
    |||||||||||||||||||||   ||| |||| |||||||||||||||||| ||||||||| ||||||    
T  4098297 ttcctttgcactttcaatgaa---tttcactacaatcacacaagattacaa-ttgctcaaagacacaa 4098234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 12870706 - 12870654
Alignment:
Q  73 gttcctttgcactttcaatgaattttttaactataatcacacaagattacaatt 126  Q
    ||||||||||||||||||   |||||||| ||||||||||||||||||||||||    
T  12870706 gttcctttgcactttcaagagatttttta-ctataatcacacaagattacaatt 12870654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 9900 - 9838
Alignment:
Q  79 ttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaatacacaag 142  Q
    |||||||| ||||| |||||| | |||||||||||||| |||||| |||||||||| |||||||    
T  9900 ttgcacttccaatggatttttca-ctataatcacacaatattacagtttgctcaaacacacaag 9838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 20293 - 20231
Alignment:
Q  79 ttgcactttcaatgaattttttaactataatcacacaagattacaatttgctcaaatacacaag 142  Q
    |||||||  |||||||||||| | |||||||||||||| |||||| |||||||||| |||||||    
T  20293 ttgcactaccaatgaatttttca-ctataatcacacaatattacagtttgctcaaacacacaag 20231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 1723 - 1755
Alignment:
Q  94 attttttaactataatcacacaagattacaatt 126  Q
    ||||||| |||||||||||||||||||||||||    
T  1723 attttttcactataatcacacaagattacaatt 1755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 16303 - 16412
Alignment:
Q  174 gattgtgtttacacttgatatacaattagaggtgtaactaacttaaataacaaatgacttctaaacactaaagatattctaagatttaaagtttgtacga 273  Q
    ||||||||| ||||||||||  |||| | | ||||||  ||||||||   ||| |||||| | |||||| |||| ||| | |||||||||||||| | ||    
T  16303 gattgtgttgacacttgata--caatcatatgtgtaagaaacttaaagtgcaagtgacttatgaacacttaagaaattatgagatttaaagtttggaaga 16400  T
Q  274 atttttctaagt 285  Q
    ||||||||||||    
T  16401 atttttctaagt 16412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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