View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_high_22 (Length: 351)
Name: NF16668_high_22
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 120 - 335
Target Start/End: Original strand, 48311193 - 48311408
Alignment:
| Q |
120 |
aacgatgatggagaaatttcacaatgtctggnnnnnnnggtgaagaaattattaggtaatcgaaagtaaggttttgaatagtgtttgttagaatgaagtt |
219 |
Q |
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| T |
48311193 |
aacgatgatggagaaatttcacactgtctggtttttttggtgaagaaattattaggtaatcgaaagtaaggttttgaatagtgtttgttagaatgaagtt |
48311292 |
T |
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| Q |
220 |
tgatttgattaatggaatggttagtgaacatttgcatggtcatgaaatgagaaaccttagaacggttcctcagaatcgcgctgttcatgtttgctcaggg |
319 |
Q |
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| T |
48311293 |
tgatttgattaatggaatggttagtgaacatttgcatggtcatgaaatgagaaaccttagaacggttcctcagaatagcgctgttcatgtttgctcaggg |
48311392 |
T |
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| Q |
320 |
ttttggggggtttttg |
335 |
Q |
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|||||||||||||||| |
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| T |
48311393 |
ttttggggggtttttg |
48311408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 45008963 - 45009043
Alignment:
| Q |
18 |
attactttccatcagtactaattaactcagcttcttacaatctaaattgcaaggaaacccttatgaaaagaaagataacat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45008963 |
attactttccatcagtactaattaactcagcttcttacaatctaaattgcaaggaaacccttatgaaaagaaagataacat |
45009043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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