View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_high_3 (Length: 589)

Name: NF16668_high_3
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_high_3
NF16668_high_3
[»] chr4 (5 HSPs)
chr4 (8-575)||(38013971-38014517)
chr4 (8-239)||(37696936-37697167)
chr4 (77-264)||(37996250-37996435)
chr4 (399-457)||(12506436-12506494)
chr4 (397-457)||(29863424-29863484)
[»] chr2 (6 HSPs)
chr2 (458-575)||(31413216-31413335)
chr2 (43-228)||(25326897-25327082)
chr2 (400-475)||(24454516-24454592)
chr2 (399-457)||(10328955-10329013)
chr2 (399-457)||(23349043-23349101)
chr2 (399-457)||(18355376-18355434)
[»] chr3 (11 HSPs)
chr3 (406-473)||(47763960-47764028)
chr3 (399-457)||(24761961-24762019)
chr3 (399-457)||(24815915-24815973)
chr3 (399-457)||(2549937-2549995)
chr3 (399-457)||(53352824-53352882)
chr3 (399-457)||(31685077-31685135)
chr3 (399-457)||(53027815-53027873)
chr3 (396-457)||(17681764-17681825)
chr3 (399-457)||(37982349-37982407)
chr3 (399-457)||(53973349-53973407)
chr3 (399-457)||(12538698-12538756)
[»] chr8 (10 HSPs)
chr8 (399-457)||(24788096-24788154)
chr8 (396-457)||(27541621-27541682)
chr8 (393-457)||(23738651-23738715)
chr8 (399-457)||(31100935-31100993)
chr8 (399-457)||(5657771-5657829)
chr8 (416-473)||(5662583-5662641)
chr8 (399-457)||(14678084-14678142)
chr8 (399-453)||(24787162-24787218)
chr8 (399-457)||(8158461-8158519)
chr8 (399-444)||(33689370-33689415)
[»] scaffold0157 (1 HSPs)
scaffold0157 (399-457)||(13983-14041)
[»] scaffold0045 (1 HSPs)
scaffold0045 (399-457)||(11697-11755)
[»] scaffold0035 (1 HSPs)
scaffold0035 (399-457)||(35063-35121)
[»] chr7 (4 HSPs)
chr7 (399-457)||(1262088-1262146)
chr7 (399-457)||(26910044-26910102)
chr7 (399-457)||(48849870-48849928)
chr7 (399-457)||(43071445-43071503)
[»] chr5 (7 HSPs)
chr5 (398-457)||(19085440-19085499)
chr5 (399-457)||(22009591-22009649)
chr5 (405-473)||(22004502-22004571)
chr5 (399-457)||(7473552-7473610)
chr5 (399-457)||(9043802-9043860)
chr5 (400-457)||(30442610-30442667)
chr5 (399-458)||(30463112-30463172)
[»] scaffold0096 (1 HSPs)
scaffold0096 (399-457)||(27410-27468)
[»] chr6 (6 HSPs)
chr6 (399-457)||(3065698-3065756)
chr6 (406-457)||(33045494-33045545)
chr6 (399-453)||(10092512-10092566)
chr6 (399-457)||(16246702-16246760)
chr6 (400-457)||(4660238-4660295)
chr6 (406-453)||(30908436-30908483)
[»] scaffold0596 (1 HSPs)
scaffold0596 (399-457)||(654-712)
[»] chr1 (1 HSPs)
chr1 (403-457)||(50990911-50990965)


Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 575
Target Start/End: Original strand, 38013971 - 38014517
Alignment:
Q  8 tgtcgaagaatatggagtcggtggatttgagtaacaataaaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgt 107  Q
    |||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38013971 tgtccaagaatttggagtcggtggatttgagtaacaatagaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgt 38014070  T
Q  108 gagctacaataatctgtgtggtaaaattccacaaggtggaaaactacaaagctttgatgagtcttgttatgctcataacaaatgcttgtgtgcccctcct 207  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  38014071 gagctacaataatctgtgtggtaaaattccacaacgtggaaaactacaaagctttgatgagtcttgttacgctcataacaaatgcttgtctgcccctcct 38014170  T
Q  208 cttccaccttgcaagacttgatctgaatctgatgacaaaactatgtgaacggttttaaataaaaatgatggctgtcttagtttatttaagttcaaatcca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  38014171 cttccaccttgcaagacttgatctgaatctgatgacaaaactatgtgaacggtttt-------aatgatggctgtcttagtttatttaagttcaaatcca 38014263  T
Q  308 tataagagaagtatattatgtttgatgtcatttggatagctaattaattactaatccctctgtgcatcatattatgtctctgtaaatcatcatcatactt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      |||||||||    
T  38014264 tataagagaagtatattatgtttgatgtcatttggatagctaattaattactaatccctctgtgcatcatattatgtctctataa------atcatactt 38014357  T
Q  408 atatctaatcctacttaacattgctaatgactttgcaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcg 507  Q
    |||||||||||||        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014358 atatctaatccta--------tgctaatgactttacaaaacctaaacctagatttttaggcgccaaactattatggccgttagatcaatctatttgggcg 38014449  T
Q  508 cctggaacatgtgagccattgattgctttttaacgcttgattacacacatcaatgctagatgttaatg 575  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014450 cctggaacatatcagccattgattgctttttaacgcttgattacacacatcaatgctagatgttaatg 38014517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 37697167 - 37696936
Alignment:
Q  8 tgtcgaagaatatggagtcggtggatttgagtaacaataaaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgt 107  Q
    |||||||| || ||||| | ||||||||||| |||||||||||||| ||||||||||||  ||||||   ||||||| || ||||||  || ||||||||    
T  37697167 tgtcgaagcatttggagactgtggatttgaggaacaataaaatctatggtacgctacctaagggattgaggaagctgaagtttttgagtgaatttaatgt 37697068  T
Q  108 gagctacaataatctgtgtggtaaaattccacaaggtggaaaactacaaagctttgatgagtcttgttatgctcataacaaatgcttgtgtgcccctcct 207  Q
    ||||||||||| | |||||||| | ||||||  ||||||| || | ||||| |||||||||| ||||||||||||||| || |||||||||| | |||||    
T  37697067 gagctacaatagtttgtgtggtgagattccaataggtggagaattgcaaaggtttgatgagtattgttatgctcataataagtgcttgtgtggctctcct 37696968  T
Q  208 cttccaccttgcaagacttgatctgaatctga 239  Q
    |||| ||||||||| |||||||  ||||||||    
T  37696967 cttcaaccttgcaacacttgattcgaatctga 37696936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 37996250 - 37996435
Alignment:
Q  77 cgaagctggagcttttgaaggagtttaatgtgagctacaataatctgtgtggtaaaattccacaaggtggaaaactacaaagctttgatgagtcttg-tt 175  Q
    |||||||| | |||||||||||||||||||||||| | |||||| |||||||  | ||||||  |||||||||||| |||||||||||| ||||||| ||    
T  37996250 cgaagctgaaacttttgaaggagtttaatgtgagcaataataatttgtgtggggagattccagtaggtggaaaactgcaaagctttgataagtcttgttt 37996349  T
Q  176 atgctcataacaaatgcttgtgtgcccctcctcttccaccttgcaagacttgatctgaatctgatgacaaaactatgtgaacggtttta 264  Q
    |||||||||| |  || ||||||| | ||||||||||||||||||||||||||  |||||   |||||||||| |||||| | ||||||    
T  37996350 atgctcataataggtgtttgtgtggctctcctcttccaccttgcaagacttgaattgaat---atgacaaaaccatgtgacctgtttta 37996435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 12506436 - 12506494
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  12506436 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaaccta 12506494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 29863484 - 29863424
Alignment:
Q  397 tcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||||| |  ||||||||||| ||||||||||||| | ||||||||    
T  29863484 tcatcatacttatatctaatctttgttaacattgctcatgactttgcaaaccgtaaaccta 29863424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 458 - 575
Target Start/End: Complemental strand, 31413335 - 31413216
Alignment:
Q  458 gatttttaggcgccaaactattatggccgttagatcaatctatttgggcgcctggaacatgtgagccattgattgctttttaacgcttgattaca--cac 555  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||  |||    
T  31413335 gatttttaggcgccaaaatattgtggccgttagatcaatctatttgggtgcctggaacatatcagccattgattgctttttaacgcttgattacacacac 31413236  T
Q  556 atcaatgctagatgttaatg 575  Q
    ||||||||||||||||||||    
T  31413235 atcaatgctagatgttaatg 31413216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 43 - 228
Target Start/End: Original strand, 25326897 - 25327082
Alignment:
Q  43 aataaaatctacggtacgctacctgtgggatttgcgaagctggagcttttgaaggagtttaatgtgagctacaataatctgtgtggtaaaattccacaag 142  Q
    ||||||||||||||| ||||||||  |||| |  | |||||  || ||||||  || ||||| ||||||||||||||| |||||||| | ||||||  ||    
T  25326897 aataaaatctacggtgcgctacctaagggactgacaaagctcaaggttttgagtgactttaacgtgagctacaataatttgtgtggtgagattccaatag 25326996  T
Q  143 gtggaaaactacaaagctttgatgagtcttgttatgctcataacaaatgcttgtgtgcccctcctcttccaccttgcaagacttga 228  Q
    | |||||| | |||| |||| ||||||||| |||||||||||| || |||||||||| | ||||||||| || ||| |||||||||    
T  25326997 gaggaaaattgcaaaactttaatgagtcttcttatgctcataataagtgcttgtgtggctctcctcttcgacattgtaagacttga 25327082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 475
Target Start/End: Original strand, 24454516 - 24454592
Alignment:
Q  400 tcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctaga-tttttaggcgccaaac 475  Q
    |||||||||||||||||| || |||||||||||||   | ||||||| |||||||||| | ||||||||||||||||    
T  24454516 tcatacttatatctaatcttaattaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaac 24454592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 10329013 - 10328955
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  10329013 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 10328955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 23349101 - 23349043
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  23349101 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 23349043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 18355434 - 18355376
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||| ||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  18355434 atcatacttatatttaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 18355376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 406 - 473
Target Start/End: Complemental strand, 47764028 - 47763960
Alignment:
Q  406 ttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctag-atttttaggcgccaa 473  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  47764028 ttatatctaatcctacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaa 47763960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 24762019 - 24761961
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  24762019 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaaccta 24761961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 24815915 - 24815973
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  24815915 atcatacttatatctaatccttcttaacattgctaatgactttgcaaaccctaaaccta 24815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 2549937 - 2549995
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  2549937 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 2549995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 53352882 - 53352824
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||    
T  53352882 atcatacttatatctaatccttcttaacattgctaatgactttgcaaactctaaaccta 53352824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 31685077 - 31685135
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  31685077 atcatacttatatctaatctttattaacattgctaatgactttgcaaaccctaaaccta 31685135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 53027873 - 53027815
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| |||| ||||||||||    
T  53027873 atcatacttatatctaatccttcttaacactgctaataactttacaaaccctaaaccta 53027815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 17681764 - 17681825
Alignment:
Q  396 atcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    |||||||||||||||||||||| |  ||||||||| |||||| |||||||| ||||||||||    
T  17681764 atcatcatacttatatctaatctttgttaacattgttaatgattttgcaaaccctaaaccta 17681825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 37982349 - 37982407
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  37982349 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 37982407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 53973407 - 53973349
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  53973407 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 53973349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 12538756 - 12538698
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||| || ||||||| |||||||| ||||||||||    
T  12538756 atcatacttatatctaatctttgttaacctttctaatgattttgcaaaccctaaaccta 12538698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 24788154 - 24788096
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||    
T  24788154 atcatacttatatctaatcttaattaacattgctaatgactttgcaaaccctaaaccta 24788096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 27541682 - 27541621
Alignment:
Q  396 atcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  27541682 atcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 27541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 457
Target Start/End: Original strand, 23738651 - 23738715
Alignment:
Q  393 atcatcatcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  23738651 atcatcatcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaacccta 23738715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 31100993 - 31100935
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  31100993 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaaccta 31100935  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 5657771 - 5657829
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||| ||||||||||||||||||| ||||||||||    
T  5657771 atcatacttatatctaatctttgttaacgttgctaatgactttgcaaaccctaaaccta 5657829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 5662583 - 5662641
Alignment:
Q  416 tcctacttaacattgctaatgactttgcaaaacctaaacctaga-tttttaggcgccaa 473  Q
    ||||| |||| |||||||||||||||||||| |||||||||||| ||||||||||||||    
T  5662583 tcctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaa 5662641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 14678142 - 14678084
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||| ||| ||||||||||    
T  14678142 atcatacttatatctaatctttgttaacattgctaatgactttgaaaaccctaaaccta 14678084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 453
Target Start/End: Complemental strand, 24787218 - 24787162
Alignment:
Q  399 atcatacttatatctaatcctac--ttaacattgctaatgactttgcaaaacctaaa 453  Q
    ||||||||||||||||||| ||   ||||||||||||||||||||||||| ||||||    
T  24787218 atcatacttatatctaatcttataattaacattgctaatgactttgcaaatcctaaa 24787162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 8158461 - 8158519
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||  |  |||||| ||||||| || ||||||||||||||||||    
T  8158461 atcatacttatatctaatttttgttaacaatgctaattaccttgcaaaacctaaaccta 8158519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Complemental strand, 33689415 - 33689370
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgca 444  Q
    ||||||| ||||||||||| |  |||||||||||||||||||||||    
T  33689415 atcatacctatatctaatctttgttaacattgctaatgactttgca 33689370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 14041 - 13983
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  14041 atcatacttatatctaatctttgttaacattgctaatgactttgcaaatcctaaaccta 13983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 11755 - 11697
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  11755 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 11697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 35063 - 35121
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  35063 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 35121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 1262088 - 1262146
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  1262088 atcatacttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 1262146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 26910102 - 26910044
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  |||||||||||||| |||||||||| ||||||||||    
T  26910102 atcatacttatatctaatctttgttaacattgctaataactttgcaaaccctaaaccta 26910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 48849928 - 48849870
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||||||| ||| ||||||||||    
T  48849928 atcatacttatatctaatctttgttaacattgctaatgactttgtaaatcctaaaccta 48849870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 43071503 - 43071445
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  43071503 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 43071445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 457
Target Start/End: Complemental strand, 19085499 - 19085440
Alignment:
Q  398 catcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    |||||||||||||| ||||| |  ||||||||||||||||||||||||| ||||||||||    
T  19085499 catcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaaaccta 19085440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 22009649 - 22009591
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||||||    
T  22009649 atcatacttatatctaatctttgttaacattgctaatgaatttgcaaaccctaaaccta 22009591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 22004571 - 22004502
Alignment:
Q  405 cttatatctaatcctacttaacattgctaatgactttgcaaaacctaaacctagat-ttttaggcgccaa 473  Q
    ||||||||||||| |  |||||||||||||||| |||||||| |||||||||||||  ||||||||||||    
T  22004571 cttatatctaatctttgttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaa 22004502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 7473610 - 7473552
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  7473610 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 7473552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 9043802 - 9043860
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  9043802 atcatacttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 9043860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 30442667 - 30442610
Alignment:
Q  400 tcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    |||| ||||||||||||| |  ||||||||||||||||  ||||||| ||||||||||    
T  30442667 tcatgcttatatctaatctttgttaacattgctaatgaaattgcaaaccctaaaccta 30442610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 458
Target Start/End: Complemental strand, 30463172 - 30463112
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaa-cctaaacctag 458  Q
    ||||||||||||||||||| |  |||||| ||||||| || |||||||| |||||||||||    
T  30463172 atcatacttatatctaatctttgttaacaatgctaattaccttgcaaaaccctaaacctag 30463112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 27410 - 27468
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  |||||||||||||||| |||||||| ||||||||||    
T  27410 atcatacttatatctaatctttgttaacattgctaatgattttgcaaaccctaaaccta 27468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 3065698 - 3065756
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  ||||||| ||||||||||||||||| ||||||||||    
T  3065698 atcatacttatatctaatctttgttaacatggctaatgactttgcaaaccctaaaccta 3065756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 406 - 457
Target Start/End: Complemental strand, 33045545 - 33045494
Alignment:
Q  406 ttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    |||||||||||| |  ||||||||||||||||||||||||| ||||||||||    
T  33045545 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaaccta 33045494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 453
Target Start/End: Original strand, 10092512 - 10092566
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaa 453  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||||||| ||||||    
T  10092512 atcatacttatatctaatctttgttaacattgttaatgactttgcaaaccctaaa 10092566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 16246702 - 16246760
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||||||| |  | ||||||||||||||||||||||| ||||| ||||    
T  16246702 atcatacttatatctaatctttgtgaacattgctaatgactttgcaaaccctaatccta 16246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 4660295 - 4660238
Alignment:
Q  400 tcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    |||||||||||| ||||| |  ||||||||||||||||||||||||| ||||| ||||    
T  4660295 tcatacttatatataatctttgttaacattgctaatgactttgcaaaccctaacccta 4660238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 30908483 - 30908436
Alignment:
Q  406 ttatatctaatcctacttaacattgctaatgactttgcaaaacctaaa 453  Q
    |||||||||||| |  ||||||||||||||||||||||||| ||||||    
T  30908483 ttatatctaatctttgttaacattgctaatgactttgcaaaccctaaa 30908436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 654 - 712
Alignment:
Q  399 atcatacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||| ||| |  ||||||||||||||||  ||||||| ||||||||||    
T  654 atcatacttatatctgatctttgttaacattgctaatgaaattgcaaaccctaaaccta 712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 50990911 - 50990965
Alignment:
Q  403 tacttatatctaatcctacttaacattgctaatgactttgcaaaacctaaaccta 457  Q
    ||||||||||||||| |  ||||||||||| || |||||||||| ||||||||||    
T  50990911 tacttatatctaatctttgttaacattgctgataactttgcaaaccctaaaccta 50990965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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