View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_high_30 (Length: 307)
Name: NF16668_high_30
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 34 - 297
Target Start/End: Complemental strand, 40694728 - 40694465
Alignment:
| Q |
34 |
ggattcacgaggttaattgtgctgaaaatatgttattgatagtttgttactagctaactcttcacattactcaaacaccccctctgatttattggattac |
133 |
Q |
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| T |
40694728 |
ggattcacaaggttaattgtgctgaaaatatgttattgatagtttgttactagctaactcttcacattactcaaacaccccctctgatttattggattac |
40694629 |
T |
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| Q |
134 |
aactcccaatttcatcaatttttccgagttacaattttattgttgtttttggaacaaacataacttttaatcgatttattttaaagggttgagcaatttg |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40694628 |
aactcccaatttcatcaatttttccgagttacaattttattgttgtttttggaacaaacgtaacttttaatcgatttattttaaagggttgagcaatttg |
40694529 |
T |
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| Q |
234 |
agagacctataaaacaatcacttaggctgaaagtagtgtgatgcctggtggttagttgatgatg |
297 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
40694528 |
agagacctataaaacaatcacttaggctaaaaggagtgtgatgcctggtggttagttgatgatg |
40694465 |
T |
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