View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_high_38 (Length: 276)
Name: NF16668_high_38
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 52340930 - 52341049
Alignment:
| Q |
140 |
tggatgagaatcaaaatataaccaattttatggcaaggtagagaaacacataaaccgaatcgactttccggtacggttgttacaatttccgacacagtgg |
239 |
Q |
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| T |
52340930 |
tggatgagaatcaaaatatatccaattttatggcaaggtagagaaacacataaactgaatcgactttccggtacggttgttacaatttccgacacagtgg |
52341029 |
T |
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| Q |
240 |
ttacaaaatgagactccgtg |
259 |
Q |
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| T |
52341030 |
ttacaaaatgagactccgtg |
52341049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 9190769 - 9190826
Alignment:
| Q |
140 |
tggatgagaatcaaaatataaccaattttatggcaaggtagagaaacacataaaccga |
197 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9190769 |
tggatgagaatcaaaatatatccaattttatggcaaggtagagaaacacataaaccga |
9190826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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