View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_high_4 (Length: 579)

Name: NF16668_high_4
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_high_4
NF16668_high_4
[»] chr1 (6 HSPs)
chr1 (113-579)||(40694782-40695264)
chr1 (26-83)||(40695266-40695323)
chr1 (68-155)||(15322212-15322300)
chr1 (26-102)||(48400948-48401023)
chr1 (57-110)||(563857-563910)
chr1 (206-243)||(22066368-22066405)
[»] chr3 (3 HSPs)
chr3 (68-113)||(46621515-46621560)
chr3 (57-135)||(15462088-15462166)
chr3 (29-105)||(26988677-26988752)
[»] chr7 (2 HSPs)
chr7 (20-87)||(10711673-10711739)
chr7 (208-304)||(42003785-42003881)
[»] chr2 (2 HSPs)
chr2 (198-245)||(24578119-24578166)
chr2 (56-110)||(22417298-22417352)
[»] scaffold0071 (1 HSPs)
scaffold0071 (57-135)||(26-104)
[»] chr5 (2 HSPs)
chr5 (208-250)||(2586485-2586527)
chr5 (70-111)||(22023743-22023784)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 113 - 579
Target Start/End: Complemental strand, 40695264 - 40694782
Alignment:
Q  113 acataaagtgtgcgaaaaactcaataagatgaaaaagaatgtgcgttaannnnnnnatcacaaatgaggtcttaaacaagttttaatatgatgcattttt 212  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  40695264 acataaggtgtgcgaaaaactcaataaaatgaaaaagaatgtgcgttaattttta-atcacaaatgaggtcttaaacaagttttaatatgatgcattttt 40695166  T
Q  213 tgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttatccttggatcggcc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40695165 tgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttacccttggatcggcc 40695066  T
Q  313 tttctttcatggatagtcctcccaatttgtacgattaaataattaaattgtcatgtttccattttgttaggtagattctatgagtgtccactctttctgg 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40695065 tttctttcatggatagtcctcccaatttgtacgattaaataattaaattgtcatgtttccattttgtttggtagattctatgagtgtccactctttctgg 40694966  T
Q  413 tgacataacaactaataatcttctctcnnnnnnnnnnnnnnnntcagttgttgcttccctgctccttctatttggtctc------------------att 494  Q
    |||||||||||||||||||||||||||                |||||||||||| |||||||||||||||||||||||                  |||    
T  40694965 tgacataacaactaataatcttctctcaaaaacaaaacaaaaatcagttgttgctcccctgctccttctatttggtctcattaacacaactgctggaatt 40694866  T
Q  495 agcacaactgctggctgcagctatatttagcaaatacttccaatgaaaccataattacactccaaatcttatttattaccatttt 579  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40694865 aacacaactgctggctgcagctatattta-caaatacttccaatgaaaccataattacactccaaatcttatttattaccatttt 40694782  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 40695323 - 40695266
Alignment:
Q  26 ttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtt 83  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  40695323 ttcggattctgaaatttgaaatgttttaagtgtgttttagaggattttataaggtgtt 40695266  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 15322300 - 15322212
Alignment:
Q  68 gattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactcaataaga-tgaaaaagaatgtg 155  Q
    |||||||||| ||||||||| ||||||||||||||||| | |||||||||| |   |||| |||| ||||||||  |||||||||||||    
T  15322300 gattttataaagtgtttatgtcgtttgaattttataatccaaattacataatgcacgcgagaaacgcaataagacggaaaaagaatgtg 15322212  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 48400948 - 48401023
Alignment:
Q  26 ttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatgccgtttgaattttat 102  Q
    |||||||||| |||| | |||||||||||  ||||||| |||| ||||||| ||||||||||||||  |||||||||    
T  48400948 ttcggattctaaaatccgaaatgttttaac-gtgttttggaggtttttatagggtgtttatgccgtccgaattttat 48401023  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 563857 - 563910
Alignment:
Q  57 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaa 110  Q
    ||||||| |||||||||||| |||||||||| | ||| |||| |||||||||||    
T  563857 gtgtttttgaggattttatagggtgtttatgtcatttaaattctataattcgaa 563910  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 22066405 - 22066368
Alignment:
Q  206 cattttttgtttgcatatgaagtctttttgtttataaa 243  Q
    |||||||||||||||| |||||| ||||||||||||||    
T  22066405 cattttttgtttgcatgtgaagtttttttgtttataaa 22066368  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 46621560 - 46621515
Alignment:
Q  68 gattttataaggtgtttatgccgtttgaattttataattcgaatta 113  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  46621560 gattttataaggtgtttatgttgtttgaattttataattcgaatta 46621515  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 15462088 - 15462166
Alignment:
Q  57 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactca 135  Q
    |||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||| | ||||| | | |||| |||||||    
T  15462088 gtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 15462166  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 26988752 - 26988677
Alignment:
Q  29 ggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatgccgtttgaattttataat 105  Q
    ||||||| ||||||||||| |||||| ||| |||| ||| |||||||   ||||||||||||||| |||| ||||||    
T  26988752 ggattctaaaattcaaaattttttaa-tgtatttttgagaattttatggagtgtttatgccgtttaaattctataat 26988677  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 10711673 - 10711739
Alignment:
Q  20 gtcatgttcggattctgaaattcaaaatgttttaagtgtgttttagaggattttataaggtgtttatg 87  Q
    ||||||||||||||||||||| | ||||||||||| |||||||| || | ||||||| ||||||||||    
T  10711673 gtcatgttcggattctgaaatccgaaatgttttaa-tgtgttttggaaggttttatagggtgtttatg 10711739  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 42003881 - 42003785
Alignment:
Q  208 ttttttgtttgcatatgaagtctttttgtttataaaatttgataaaaataattttgttggtagaattaaagcaagagctttagtagccttatccttg 304  Q
    ||||| |||||||||||  |  ||||| |||||||||| | ||||  ||  ||||||||| |||| ||||||||  ||||||||||||||| |||||    
T  42003881 tttttagtttgcatatgtgggatttttatttataaaatataataattatttttttgttgggagaactaaagcaacggctttagtagccttacccttg 42003785  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 24578166 - 24578119
Alignment:
Q  198 atatgatgcattttttgtttgcatatgaagtctttttgtttataaaat 245  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  24578166 atatgaggcatttttagtttgtatatgaagtctttttgtttataaaat 24578119  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 22417298 - 22417352
Alignment:
Q  56 tgtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaa 110  Q
    |||||||| |||| ||||||| ||||||||||||||||| ||| |||||| ||||    
T  22417298 tgtgttttggaggtttttatagggtgtttatgccgtttggattatataatccgaa 22417352  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 104 - 26
Alignment:
Q  57 gtgttttagaggattttataaggtgtttatgccgtttgaattttataattcgaattacataaagtgtgcgaaaaactca 135  Q
    |||||||||||| ||||||  ||||||||||||||||| ||| ||||||||||| | ||||| | | |||| |||||||    
T  104 gtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 26  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 2586485 - 2586527
Alignment:
Q  208 ttttttgtttgcatatgaagtctttttgtttataaaatttgat 250  Q
    |||||||||||||||||| | ||||||| ||||||||||||||    
T  2586485 ttttttgtttgcatatgaggcctttttgcttataaaatttgat 2586527  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 22023784 - 22023743
Alignment:
Q  70 ttttataaggtgtttatgccgtttgaattttataattcgaat 111  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||    
T  22023784 ttttatagggtgtttatgccgttggaattctataattcgaat 22023743  T

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