View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_high_44 (Length: 251)

Name: NF16668_high_44
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_high_44
NF16668_high_44
[»] scaffold0088 (1 HSPs)
scaffold0088 (42-243)||(46914-47114)
[»] chr4 (4 HSPs)
chr4 (103-184)||(11314441-11314522)
chr4 (102-182)||(27918506-27918586)
chr4 (115-192)||(42380866-42380943)
chr4 (118-182)||(42170570-42170634)
[»] chr3 (4 HSPs)
chr3 (98-198)||(1214866-1214965)
chr3 (101-149)||(55290326-55290374)
chr3 (98-151)||(41935957-41936010)
chr3 (142-183)||(43978456-43978497)
[»] chr2 (3 HSPs)
chr2 (103-203)||(11129509-11129609)
chr2 (115-176)||(21425054-21425115)
chr2 (102-183)||(28694479-28694560)
[»] chr7 (2 HSPs)
chr7 (101-183)||(40343294-40343376)
chr7 (100-144)||(37467224-37467268)
[»] chr5 (3 HSPs)
chr5 (103-183)||(40279675-40279755)
chr5 (98-198)||(41954677-41954776)
chr5 (103-191)||(15711128-15711214)
[»] chr1 (4 HSPs)
chr1 (103-183)||(21937922-21938002)
chr1 (109-183)||(9001595-9001669)
chr1 (98-151)||(4226288-4226341)
chr1 (120-180)||(6947947-6948007)
[»] chr8 (3 HSPs)
chr8 (98-191)||(33822151-33822244)
chr8 (102-180)||(5374500-5374578)
chr8 (102-183)||(23052134-23052215)
[»] chr6 (1 HSPs)
chr6 (160-194)||(8543497-8543531)


Alignment Details
Target: scaffold0088 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 46914 - 47114
Alignment:
Q  42 ataagagacata-ttttatgggcaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattctttgatatcgtaaagtga 140  Q
    |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46914 ataagagacatacttttacggacaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattctttgatattgtaaagtga 47013  T
Q  141 catataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatggaatataatttaattgttggtgtttttcttttacctattttcat 240  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||    
T  47014 catataatttgaaacaaataaattttgctagaatgacatataaagtggaacagatggaatataatttaattgttg--gtttttcttttaccttttttcat 47111  T
Q  241 ttc 243  Q
    |||    
T  47112 ttc 47114  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 11314441 - 11314522
Alignment:
Q  103 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaa 184  Q
    ||||||||||| |||||||||||||||| ||||| ||| ||||||||||||  |||||||||||| ||||||||||||||||    
T  11314441 aaaataaacattaatgattctttgatattgtaaaatgatatataatttgaaacaaataaattttggtagaatgacatataaa 11314522  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 27918506 - 27918586
Alignment:
Q  102 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatata 182  Q
    |||||||| ||| |||||||| ||||||| ||||| ||||||||||||||||  ||| |||||||||||||||||||||||    
T  27918506 gaaaataagcattaatgattcattgatattgtaaaatgacatataatttgaaagaaacaaattttgctagaatgacatata 27918586  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 42380866 - 42380943
Alignment:
Q  115 aatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaaca 192  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||| |||||||| |||||| ||||||||  |||||||    
T  42380866 aatgattctttgatattgtaaagtgacatagaatttgaaacaaacaaattttgttagaattacatataatttggaaca 42380943  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 42170634 - 42170570
Alignment:
Q  118 gattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatata 182  Q
    ||||||||||||| ||||| |||||||||| ||| |  ||||| |||||||||||||||||||||    
T  42170634 gattctttgatattgtaaaatgacatataacttggaacaaatagattttgctagaatgacatata 42170570  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 1214866 - 1214965
Alignment:
Q  98 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatgg 197  Q
    |||||||||||||| | |||||||| ||| ||| ||||||||||||||||||||||  |||| ||||||| |||||||||||||||  |||||| |||||    
T  1214866 ataggaaaataaacgtcaatgattccttgttattgtaaagtgacatataatttgaa-caaatgaattttggtagaatgacatataatttggaacggatgg 1214964  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 55290326 - 55290374
Alignment:
Q  101 ggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatt 149  Q
    ||||||||||||| |||||||| |||||||| |||| ||||||||||||    
T  55290326 ggaaaataaacattaatgattcattgatatcttaaaatgacatataatt 55290374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 41936010 - 41935957
Alignment:
Q  98 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttg 151  Q
    |||||||||| ||||| |||||||| ||| ||| |||||| |||||||||||||    
T  41936010 ataggaaaattaacattaatgattcattggtattgtaaagcgacatataatttg 41935957  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 43978456 - 43978497
Alignment:
Q  142 atataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    |||||||||| | |||||||||||||||| ||||||||||||    
T  43978456 atataatttggaataaataaattttgctaaaatgacatataa 43978497  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 11129609 - 11129509
Alignment:
Q  103 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatggaatat 202  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||  |  ||| |||||||| |||||||||||||||  || ||| ||||||||||    
T  11129609 aaaataaacattaatgattccttgatattgtaaagtgacatataatttagaacaaacaaattttgttagaatgacatataatttgaaacggatggaatat 11129510  T
Q  203 a 203  Q
    |    
T  11129509 a 11129509  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 21425115 - 21425054
Alignment:
Q  115 aatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatga 176  Q
    ||||||||||||| || |||||||||| ||||||||| |  ||| |||||||||||||||||    
T  21425115 aatgattctttgacattgtaaagtgacgtataatttggaacaaacaaattttgctagaatga 21425054  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 28694479 - 28694560
Alignment:
Q  102 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    |||| ||| ||| ||| ||||||| |||| ||||| |||||| ||||||| |  ||||||||||||||| ||| ||||||||    
T  28694479 gaaattaagcattaataattctttaatattgtaaaatgacatgtaatttggaacaaataaattttgctaaaataacatataa 28694560  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 40343376 - 40343294
Alignment:
Q  101 ggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    |||||||||| || |||||||| |||||||||||||||||||||||||||  | |||| ||||||| ||| ||||||||||||    
T  40343376 ggaaaataaaaattaatgattccttgatatcgtaaagtgacatataatttagaataaacaaattttactaaaatgacatataa 40343294  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 37467224 - 37467268
Alignment:
Q  100 aggaaaataaacatgaatgattctttgatatcgtaaagtgacata 144  Q
    |||||||||||||| |||||||||| |||||  ||||||||||||    
T  37467224 aggaaaataaacattaatgattcttggatattttaaagtgacata 37467268  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 40279675 - 40279755
Alignment:
Q  103 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    |||| |||||| |||||||| || |||| ||||||||| |||||||||||| |||| |||||||| |||||||||||||||    
T  40279675 aaaaaaaacattaatgattcattaatattgtaaagtgatatataatttgaaataaacaaattttgttagaatgacatataa 40279755  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 41954677 - 41954776
Alignment:
Q  98 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaacagatgg 197  Q
    |||||||||||||| | |||||||| ||| ||| |||||||||||||||||||| |  |||| ||||||| |||||||||||||||  |||||| |||||    
T  41954677 ataggaaaataaacgtcaatgattccttgttattgtaaagtgacatataatttgga-caaatgaattttggtagaatgacatataatttggaacggatgg 41954775  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 191
Target Start/End: Original strand, 15711128 - 15711214
Alignment:
Q  103 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaac 191  Q
    |||||||| || ||| |||||||||||| |||||||||||||||||||||   ||| |||||||| || |||||| |||||||||||||    
T  15711128 aaaataaatattaataattctttgatattgtaaagtgacatataatttga--caaacaaattttgttaaaatgacttataaagtggaac 15711214  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 183
Target Start/End: Complemental strand, 21938002 - 21937922
Alignment:
Q  103 aaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    ||||||| ||| |||||||| |||||||  |||| ||||||||||||||| | |||||||||||| |||||||||||||||    
T  21938002 aaaataagcatcaatgattcattgatattataaaatgacatataatttgaggcaaataaattttgttagaatgacatataa 21937922  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 9001669 - 9001595
Alignment:
Q  109 aacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    ||||| |||||||| ||||||| ||||||||||||||||||| ||  ||| |||||||| || ||||||||||||    
T  9001669 aacattaatgattcattgatattgtaaagtgacatataatttaaaacaaacaaattttgttaaaatgacatataa 9001595  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 4226341 - 4226288
Alignment:
Q  98 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttg 151  Q
    |||||||||  ||||| |||| ||| ||||||| ||||||||||||||||||||    
T  4226341 ataggaaaagtaacattaatgtttcattgatattgtaaagtgacatataatttg 4226288  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 6947947 - 6948007
Alignment:
Q  120 ttctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacata 180  Q
    ||||||||||| ||||| |||||||||||||||   ||||| ||||||  |||||||||||    
T  6947947 ttctttgatattgtaaattgacatataatttgatacaaatatattttgtcagaatgacata 6948007  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 33822244 - 33822151
Alignment:
Q  98 ataggaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataaagtggaac 191  Q
    |||||||||||  ||| |||||||| ||||||| |||| ||  | ||||||||| |  ||||||||||||||||||||||||||||||| ||||    
T  33822244 ataggaaaatacgcattaatgattccttgatattgtaaggtcgcgtataatttggaacaaataaattttgctagaatgacatataaagtagaac 33822151  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 5374578 - 5374500
Alignment:
Q  102 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacata 180  Q
    |||||||||||| ||||||||  |||||| ||||| |||||||||||||| |  ||| ||||||| ||| |||||||||    
T  5374578 gaaaataaacattaatgattcaatgatattgtaaaatgacatataatttggaacaaacaaattttactaaaatgacata 5374500  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 23052215 - 23052134
Alignment:
Q  102 gaaaataaacatgaatgattctttgatatcgtaaagtgacatataatttgaagtaaataaattttgctagaatgacatataa 183  Q
    ||||| |||||| |||||||| || |||| ||||||||||||||||||| ||  ||| |||||||||| | |||| ||||||    
T  23052215 gaaaaaaaacattaatgattccttaatattgtaaagtgacatataatttaaaacaaacaaattttgctcggatgatatataa 23052134  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 8543531 - 8543497
Alignment:
Q  160 aaattttgctagaatgacatataaagtggaacaga 194  Q
    ||||||||||| |||||||||||||||||||||||    
T  8543531 aaattttgctaaaatgacatataaagtggaacaga 8543497  T

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