View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16668_high_54 (Length: 205)
Name: NF16668_high_54
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_high_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 35 - 190
Target Start/End: Original strand, 26880754 - 26880909
Alignment:
| Q |
35 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaaccaattacgacacgtacctgaacaaatataattttaagaacaattaatc |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
26880754 |
tgcatgaatgtaagaaacaaagcaaacttgtcagttaatgaagaccaagaacaaatcacgatacgtacctgaacacatacaattttaagaagaattaatc |
26880853 |
T |
|
| Q |
135 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccatt |
190 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
26880854 |
acctcaggctcactaccatcagagttgaaaatcctcattgtatagtcagtgccatt |
26880909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 40252464 - 40252518
Alignment:
| Q |
135 |
acctaaggctcactaccatcagggttgaaaatcctcatcgtatagtcagtgccat |
189 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |
|
|
| T |
40252464 |
acctcaggctcactaccatcagagttgaaaatcctcattgtataatcagtaccat |
40252518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University