View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_high_7 (Length: 488)

Name: NF16668_high_7
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_high_7
NF16668_high_7
[»] chr6 (16 HSPs)
chr6 (1-488)||(27587610-27588097)
chr6 (238-409)||(26061233-26061406)
chr6 (238-409)||(26081203-26081376)
chr6 (238-392)||(25487985-25488141)
chr6 (238-334)||(27659637-27659733)
chr6 (236-383)||(26808001-26808150)
chr6 (246-385)||(27599556-27599691)
chr6 (140-204)||(27312866-27312930)
chr6 (140-204)||(27700879-27700943)
chr6 (146-204)||(25487868-25487926)
chr6 (146-204)||(26061116-26061174)
chr6 (146-204)||(26081086-26081144)
chr6 (144-204)||(26634379-26634439)
chr6 (144-204)||(26740355-26740415)
chr6 (164-204)||(27659788-27659828)
chr6 (123-203)||(27712414-27712493)
[»] chr2 (2 HSPs)
chr2 (255-409)||(17988758-17988906)
chr2 (137-250)||(17989340-17989453)
[»] chr4 (1 HSPs)
chr4 (122-205)||(5083591-5083674)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Complemental strand, 27588097 - 27587610
Alignment:
Q  1 tctgctgaatgtgaagagtgtttctacactaaagtttttgctgctatattgtgagtaattactattattattatttgatttatgtaaaatgtgcatacca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588097 tctgctgaatgtgaagagtgtttctacactaaagtttttgctgctatattgtgagtaattactattattattatttgatttatgtaaaatgtgcatacca 27587998  T
Q  101 ggttgaagcaactatggtaatgagctttctgatgtacaggaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587997 ggttgaagcaactatggtaatgagctttctgatgtacaggaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatg 27587898  T
Q  201 agtcacgacttccgttcttaagaatcaaactacggtgctctggtattgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagata 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27587897 agtcacgacttccgttcttaagaatcaaactacggtgctctggtattgatatagtgagacctgatgtaaggttttgtggaggatgtttgtgctgcagata 27587798  T
Q  301 ttgtttgaatttgatgctttcattactgtatgtttacaagcaaggattagcttgtagaatcaatacatgtagaagtacatgtaaattctggatggcaacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587797 ttgtttgaatttgatgctttcattactgtatgtttacaagcaaggattagcttgtagaatcaatacatgtagaagtacatgtaaattctggatggcaacc 27587698  T
Q  401 ttggataataaatttctatgttttacttgcttgtagaagtacatgtttttctgggtaattatttttgttgttagtaatatgtgatgat 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27587697 ttggataataaatttctatgttttacttgcttgtagaagtacatgtttttctgggtaattatttttgttgttagtaatatgtgatgat 27587610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 238 - 409
Target Start/End: Original strand, 26061233 - 26061406
Alignment:
Q  238 ctctggtattgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgtttac 337  Q
    ||||||| ||||||| |||||||||||||||   |||| |||||||||||||||||||| |||||||||||||| |||  |||||||||||||  ||||     
T  26061233 ctctggttttgatatggtgagacctgatgtaattttttatggaggatgtttgtgctgcatatattgtttgaattcgattatttcattactgtacatttag 26061332  T
Q  338 aagcaaggattagcttgtagaatcaatac--atgtagaagtacatgtaaattctggatggcaaccttggataat 409  Q
    | ||| | ||||| || |||||| || ||   | |||||||||||||||||| |||| | ||||||||||||||    
T  26061333 atgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggaggccaaccttggataat 26061406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 238 - 409
Target Start/End: Original strand, 26081203 - 26081376
Alignment:
Q  238 ctctggtattgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgtttac 337  Q
    ||||||| ||||||| |||||||||||||||   |||| |||||||||||||||||||| |||||||||||||| |||  |||||||||||||  ||||     
T  26081203 ctctggttttgatatggtgagacctgatgtaattttttatggaggatgtttgtgctgcatatattgtttgaattcgattatttcattactgtacatttag 26081302  T
Q  338 aagcaaggattagcttgtagaatcaatac--atgtagaagtacatgtaaattctggatggcaaccttggataat 409  Q
    | ||| | ||||| || |||||| || ||   | |||||||||||||||||| |||| | ||||||||||||||    
T  26081303 atgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatggaggccaaccttggataat 26081376  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 392
Target Start/End: Original strand, 25487985 - 25488141
Alignment:
Q  238 ctctggtattgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgtttac 337  Q
    ||||||| ||||||| |||||||||||||||   |||| |||||||||||||||||||| |||||||||||||| |||  |||||||||||||  ||||     
T  25487985 ctctggttttgatatggtgagacctgatgtaattttttatggaggatgtttgtgctgcaaatattgtttgaattcgattatttcattactgtacatttag 25488084  T
Q  338 aagcaaggattagcttgtagaatcaatac--atgtagaagtacatgtaaattctgga 392  Q
    | ||| | ||||| || |||||| || ||   | |||||||||||||||||| ||||    
T  25488085 atgcatgcattagattatagaatgaacaccattttagaagtacatgtaaattatgga 25488141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 27659733 - 27659637
Alignment:
Q  238 ctctggtattgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgtt 334  Q
    ||||||| || |||| ||||||| ||||||| | ||||  |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  27659733 ctctggtttttatatggtgagacatgatgtaagtttttaaggaggatgtttgtgctacagatattgtttgaatttgattctttcattattgtatgtt 27659637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 383
Target Start/End: Original strand, 26808001 - 26808150
Alignment:
Q  236 tgctctggtattgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgttt 335  Q
    ||||||||| |||| || |||||||| |||||||| | ||  |  ||||||||||| |||||||||||||||||||| | | ||| |||| |||| ||||    
T  26808001 tgctctggtcttgaaatggtgagacccgatgtatgttcttacgacggatgtttgtgttgcagatattgtttgaattttacgatttaattaatgtacgttt 26808100  T
Q  336 acaagcaaggattagcttgtagaatcaata-cat-gtagaagtacatgta 383  Q
    |||| || | ||||||||||||||| |||| ||| |||||||||||||||    
T  26808101 acaaacatgcattagcttgtagaatgaatagcatggtagaagtacatgta 26808150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 27599691 - 27599556
Alignment:
Q  246 ttgatatagtgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgtttacaagcaagg 345  Q
    ||||||| |||| |||||||||| | ||||  |||||||| ||||||||||||||      |||||||||||||||||||||||| ||||||||| | |     
T  27599691 ttgatatggtgatacctgatgtaagtttttagggaggatgcttgtgctgcagata------gaatttgatgctttcattactgtaggtttacaagaatgc 27599598  T
Q  346 attagcttgtagaatcaatac--atgtagaagtacatgtaaa 385  Q
    | ||| |||| |||| |||||   ||||||||||||||||||    
T  27599597 aataggttgtggaattaataccattgtagaagtacatgtaaa 27599556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 27312930 - 27312866
Alignment:
Q  140 gaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||||||| ||||||||||| ||||| | ||||||||||||| ||||||||||||| |||||    
T  27312930 gaagtaatgtgtgataaagaactaaatctaagaaccgacatttatgagatccttttgcaagagtc 27312866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 27700943 - 27700879
Alignment:
Q  140 gaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||||||| ||||||||||| ||||| | |||| |||||||| ||||||||||||| |||||    
T  27700943 gaagtaatgtgtgataaagaactaaatctaagaaccaacatttatgagatccttttgcaagagtc 27700879  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 25487868 - 25487926
Alignment:
Q  146 atgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||||||||||| | ||||||| |||||||||| || ||||||||||||| |||||    
T  25487868 atgtgggataaagaaataaatctgagaaccgacattcatgagatccttttgcaagagtc 25487926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 26061116 - 26061174
Alignment:
Q  146 atgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||||||||||| | |||| || |||||||||| || ||||||||||||| |||||    
T  26061116 atgtgggataaagaaataaatccgagaaccgacattcatgagatccttttgcaagagtc 26061174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 26081086 - 26081144
Alignment:
Q  146 atgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||||||||||| | |||| || |||||||||| || ||||||||||||| |||||    
T  26081086 atgtgggataaagaaataaatccgagaaccgacattcatgagatccttttgcaagagtc 26081144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 26634379 - 26634439
Alignment:
Q  144 taatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||| ||||||||||| ||||| | ||||||||||||| | |||||| |||| |||||    
T  26634379 taatgtgtgataaagaactaaatctaagaaccgacatttatgaaatccttctgcaagagtc 26634439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 26740355 - 26740415
Alignment:
Q  144 taatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||| ||||||||||| ||||| | ||||||||||||| | |||||| |||| |||||    
T  26740355 taatgtgtgataaagaactaaatctaagaaccgacatttatgaaatccttctgcaagagtc 26740415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 27659828 - 27659788
Alignment:
Q  164 aatctgacaaccgacatttataagatccttttgcatgagtc 204  Q
    ||||||| ||||||||||||| ||||||||||||| |||||    
T  27659828 aatctgataaccgacatttatgagatccttttgcaagagtc 27659788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 27712493 - 27712414
Alignment:
Q  123 agctttctgatgtacaggaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagt 203  Q
    ||||||||||| || |||||||||||   |||||| |||| ||||| | |||| |||||||| ||||||||||||| ||||    
T  27712493 agctttctgatttagaggaagtaatgcatgataaa-aactaaatctaagaaccaacatttatgagatccttttgcaagagt 27712414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 255 - 409
Target Start/End: Complemental strand, 17988906 - 17988758
Alignment:
Q  255 tgagacctgatgtatggttttgtggaggatgtttgtgctgcagatattgtttgaatttgatgctttcattactgtatgtttacaagcaaggattagcttg 354  Q
    ||||| |||||||| |||||||||||||||| |||||||  |||||||||||||||||||||||||||||||        |||||||| |||||||||||    
T  17988906 tgagagctgatgtaaggttttgtggaggatgcttgtgctcgagatattgtttgaatttgatgctttcattac--------tacaagcatggattagcttg 17988815  T
Q  355 tagaatcaatac--atgtagaagtacatgtaaattctggatggcaaccttggataat 409  Q
    | || |||||||   ||||||||| ||||||||||||||| | |||| |||||||||    
T  17988814 tggagtcaataccattgtagaagttcatgtaaattctggaggccaactttggataat 17988758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 17989453 - 17989340
Alignment:
Q  137 caggaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtcacgacttccgttcttaagaatcaaactacggt 236  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||| ||| ||||||||||||  |||||  |||||| |||| | ||    
T  17989453 caggaagtaatgtgggataaagaactgaatctgagaaccaacatttatccgatcctttggcaagagtcacgacttgtgttctccagaatccaactgccgt 17989354  T
Q  237 gctctggtattgat 250  Q
    |||| ||| |||||    
T  17989353 gctccggtcttgat 17989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 5083591 - 5083674
Alignment:
Q  122 gagctttctgatgtacaggaagtaatgtgggataaagaactgaatctgacaaccgacatttataagatccttttgcatgagtca 205  Q
    |||||||||||| |||| ||||||||| | ||||||||||| ||||| | ||| ||||||||| ||||||||||||| ||||||    
T  5083591 gagctttctgatctacaagaagtaatgcgtgataaagaactaaatctaagaactgacatttatgagatccttttgcaagagtca 5083674  T

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