View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16668_low_1 (Length: 670)
Name: NF16668_low_1
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 54791723 - 54791084
Alignment:
| Q |
19 |
catcctacttaaggacatggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791723 |
catcctacttaaggacatggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatg |
54791624 |
T |
|
| Q |
119 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791623 |
ctatttctgctttcagatgcttcttgaacaatatctgaaactgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
54791524 |
T |
|
| Q |
219 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791523 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctc |
54791424 |
T |
|
| Q |
319 |
aaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791423 |
aaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctg |
54791324 |
T |
|
| Q |
419 |
tacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791323 |
tacttggcaaattcctttagccagtatccagaatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcg |
54791224 |
T |
|
| Q |
519 |
gtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtt |
618 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54791223 |
gtacaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtt |
54791124 |
T |
|
| Q |
619 |
tgccttttgtttggcgtttctgtttgctgaacctttgctt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54791123 |
tgccttttgtttggcgtttctgtttgctgaacctttgctt |
54791084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Complemental strand, 52284381 - 52283742
Alignment:
| Q |
19 |
catcctacttaaggacatggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatg |
118 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
52284381 |
catcctacttaaagacatggtcttctcgttatacttatattgcattttgttgaggttttcatttgtaatatcaatttcattagccaggttttccacaatg |
52284282 |
T |
|
| Q |
119 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284281 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
52284182 |
T |
|
| Q |
219 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284181 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctc |
52284082 |
T |
|
| Q |
319 |
aaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284081 |
aaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctg |
52283982 |
T |
|
| Q |
419 |
tacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| || | ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
52283981 |
tacttggcaaattcctttagccagtatccagaatcattcagtttgctcttaatattaacaattatgcctgtccatggccagacatagttctcaacctgtg |
52283882 |
T |
|
| Q |
519 |
gtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtt |
618 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52283881 |
gtgcaggttggttgacagcttcggtcaaaggcgggggaggtatttggtctgcttcatttgctaggtcagtctccaaaaactttgccagagcgaggtggtt |
52283782 |
T |
|
| Q |
619 |
tgccttttgtttggcgtttctgtttgctgaacctttgctt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52283781 |
tgccttttgtttggcgtttctgtttgctgaacctttgctt |
52283742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Original strand, 54777423 - 54778061
Alignment:
| Q |
19 |
catcctacttaaggacatggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||||| || |
|
|
| T |
54777423 |
catcctacttaaggacatggtcttctcattatacttataccgaattatgttgaggttttcatttggaatgtcaatttcattggtcaggttttcccgtttg |
54777522 |
T |
|
| Q |
119 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54777523 |
ctattttctctttcagatgcttcttgaacaatatccgaaattgttctcagccttcctttgttccgagggtactccccgattggccctccacaattataat |
54777622 |
T |
|
| Q |
219 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54777623 |
catcttcacgtgcaacccatccataaatgtctgaactggccagcatgtccattgaattccattccttcttcccatgatgtttagtttcaaaggatttctc |
54777722 |
T |
|
| Q |
319 |
aaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctg |
418 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54777723 |
aaattcacttgcattcttgaaaccattccagtcattgttgaagtctactacagcctgagtgtcaccatccatgaagaatacatggacatccaatggtctg |
54777822 |
T |
|
| Q |
419 |
tacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
54777823 |
tacttggcaaattcctttagccagtatccagaatcgttaaggttgctcttaatgttaacgattatacctgtccatggcca-acataattctcaacctgcg |
54777921 |
T |
|
| Q |
519 |
gtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtt |
618 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
54777922 |
gtacaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcggtctccaaatactttgccagagcgaggtggtt |
54778021 |
T |
|
| Q |
619 |
tgccttttgtttggcgtttctgtttgctgaacctttgctt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54778022 |
tgccttttgtttggcgtttctgtttgctgaacctttgctt |
54778061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 656
Target Start/End: Complemental strand, 799651 - 799020
Alignment:
| Q |
19 |
catcctacttaaggacatggtcttctcattatacttatactgcattttgttgaggttttcatttgtaatgtcaatttcattggccaggttttccacaatg |
118 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
799651 |
catcctactcaaggacatagtcttctcattatacctatactgcatcttgttgagattttcattagtaatatcaatctcatttgccaggttttccacaatg |
799552 |
T |
|
| Q |
119 |
ctatttctgctttcagatgcttcttgaacaatatctgaaattgttctcagccttcctttgttccgaaggtactccccgattggccctccacaattataat |
218 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || |||| ||||||||||| |
|
|
| T |
799551 |
ctatttctgctttgagatgcttcttgaactatatctgaaattgtcctcagccttcctttgttgcgaaggtactccccaatcaaccctggacaattataat |
799452 |
T |
|
| Q |
219 |
catcttcacgtgcaacccatccataaatgtctgaactggcctgcatgtcctttgaattccagtccttcttcccatgatgtttagtttcaaaggatttctc |
318 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| |||||| |||| | |||||||| ||||| || ||| || ||||||| |||||| ||||||| |
|
|
| T |
799451 |
catcttcacgtgcaacccaaccgtaaatctctgaactgtcctgcaagtccatggaattccaatccttttttccacgacgtttagtctcaaagcatttctc |
799352 |
T |
|
| Q |
319 |
aaattcacttgcattcatgaaaccattccagtcattgttgaagtctactacagcctgattgtcaccatccatgaagaatacatggacatccaatggtctg |
418 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||||||||||| |||||| || ||||||||| ||||| ||| ||| |||| ||| || |
|
|
| T |
799351 |
aagctcacttgcattcataaacccattccagtcattgttgaagtctataacagccacggagttaccatccatcaagaacgtatgaacagccaacggtttg |
799252 |
T |
|
| Q |
419 |
tacttggcaaattcctttagccagtatccagcatcgttaaagttgctcttaatgttaacgattatgcctgtccatggccagacataattctcaacctgcg |
518 |
Q |
| |
|
||||| |||||||||||| || ||||||||| ||| | | |||| | ||||| || | |||||||||||| ||||| || || |||||||| | |
|
|
| T |
799251 |
tacttagcaaattccttttgcaagtatccagaatcatgtgatttgc---ttatgttgacaagtatgcctgtccacggccaaacgtagttctcaactt--- |
799158 |
T |
|
| Q |
519 |
gtgcaggttggttgacagcttcggccaaagccgggggaggtatttggtctgcttcatttactaggtcagtctccaaatactttgccagagcgaggtggtt |
618 |
Q |
| |
|
| |||||||| |||||| | | |||||||||| |||||| |||||||||||||||| ||| ||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
799157 |
ggacaggttggacaacagctacagtcaaagccgggcgaggtacttggtctgcttcatttgctaagtcagtcctcaaaaactttgccagagccaggtggtt |
799058 |
T |
|
| Q |
619 |
tgccttttgtttggcgtttctgtttgctgaacctttgc |
656 |
Q |
| |
|
||| ||||| || | | |||||||||| |||||||||| |
|
|
| T |
799057 |
tgctttttgctttgtgcttctgtttgccgaacctttgc |
799020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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