View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_10 (Length: 485)
Name: NF16668_low_10
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 37403365 - 37403760
Alignment:
| Q |
17 |
acatagtttatttttgtcaaaccggctgatcgtctacgacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggcggc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
37403365 |
acatagtttatttttgtcaaaccggctgatcgtctacaacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggctgc |
37403464 |
T |
|
| Q |
117 |
tagcgtggggtgaatattttcaatgcctgagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagatagagcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37403465 |
tagcgtggggtgaatattttcaatgcctgagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagatagagcaa |
37403564 |
T |
|
| Q |
217 |
acatgtaattttgctccatgatcatgattatgacccaacttatcaagcttttttttgggagtacatagcnnnnnnnnnncttctacttttttctcttatg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37403565 |
acatgtaattttgctccatgatcatgattatgacccaacttatcaagcttttttttgggagtacatagctttttttttccttctacttttttctcttatg |
37403664 |
T |
|
| Q |
317 |
gttgttttaaaccgaaccaaaccgttataatacacaatttttgtgaaccgaaccatttgtttttgtgaaccgaactgttaaccttttctgaattac |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37403665 |
gttgttttaaaccgaaccaaaccgttataatacacaatttttgtgaaccgaaccatttgtttttgtgaaccaaactgttaaccttttctgaattac |
37403760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 38240222 - 38240468
Alignment:
| Q |
21 |
agtttatttttgtcaaaccggctgatcgtctacgacaggaaaccttgcaacagatgtctcgaatacttaccatacattaaactgctcgatggcggctagc |
120 |
Q |
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|||||||| ||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||| ||| || |
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| T |
38240222 |
agtttattattgtcaaacaggctgatcatcttcgacaggaaacgttgcaacagatgtctcgaatacttaccgtacgtcaaactgctcgatggctgcttgc |
38240321 |
T |
|
| Q |
121 |
gtggggtgaatattttcaatgcctgagggatttgaccaaactttggaccagttgtcctcgtgaacctccacagtcttcatgcaagagat---agagcaaa |
217 |
Q |
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| ||||||||| |||||| |||| |||||||||| |||||||||||||| | |||||||||||||| || |||||||||||||||||| |||||||| |
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| T |
38240322 |
tttgggtgaatactttcaacgcctaagggatttgagcaaactttggaccaatcgtcctcgtgaacctgcatagtcttcatgcaagagatagaagagcaaa |
38240421 |
T |
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| Q |
218 |
catgtaatttt-gctccatgatcatgattatgacccaacttatcaag |
263 |
Q |
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| ||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
38240422 |
cctgtaattttagctccatgatcatgattatagcccaacttatcaag |
38240468 |
T |
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