View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_12 (Length: 452)
Name: NF16668_low_12
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 442
Target Start/End: Original strand, 2608240 - 2608675
Alignment:
| Q |
7 |
acatcatcatcacttacacacttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608240 |
acatcatcatcacttacacacttaacaccctcccaatttctcttcccacacaacaatctcacccctaattcacttggcatctcatcaaccaaacaccatt |
2608339 |
T |
|
| Q |
107 |
tatccccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgttgcaaattcaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2608340 |
tatccccttcactcatttcccaaacacaaacatttccaccacacgtgccaccaatcaatcccaaccctccattccatctcacaagtgtagcaaattcaag |
2608439 |
T |
|
| Q |
207 |
cctatccgcaagaggtacactaaattctctccaacaattattcccaacatcaaatcccatcacattatatgccctagccgaggtaatccaatacaacgtt |
306 |
Q |
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|||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| ||| |
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| T |
2608440 |
cctatctgcaagaggcacactaaattccctccaacaattattcccaacatcaaatcccattacactatatgccctagctgaggttatccaatacaatgtt |
2608539 |
T |
|
| Q |
307 |
gttgttcttcttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgt |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2608540 |
gttgttcttgttccctctatacacacattctcatttggtgtccaaaccgttagcctaaccgaaaattcaaccggcatcgatccaacgattttccacgtgt |
2608639 |
T |
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| Q |
407 |
caatacaagattcatatatttcaacggtcggttcat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2608640 |
caatacaagattcatatatttcaacggtcggttcat |
2608675 |
T |
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