View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_13 (Length: 450)
Name: NF16668_low_13
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_13 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Original strand, 36840439 - 36840864
Alignment:
| Q |
8 |
ataatactgcagatgtaaggaaccacccagttataattcactgtaagcgaggaaaggtgagattttgctcgatatttttaactcaccaattattcaatat |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840439 |
ataataatgcagatgtaaggaaccacccagttataattcactgtaagcggggaaaggtgagattttgctcgatatttttaactcaccaattattcaatat |
36840538 |
T |
|
| Q |
108 |
aggaatagataacaaccatctcgttcggaaaatccatattttcccgataaatttgggctaatagggttctattagataggaacagatttgattcaagttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840539 |
aggaatagataacaaccatctcgttcggaaaatccatattttcccgacaaatttgggttaatagggttctattagataggaacagatttgattcaagttt |
36840638 |
T |
|
| Q |
208 |
gatacgaannnnnnnnncttt--caaaactattagattataaatcgaaagagtattttcttgtaaaaataggtaatatcttccattcttgttgtttacag |
305 |
Q |
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|||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840639 |
gatacgaaaaaacaattttttttcaaaactattagattataaaccgaaagagtattttcttgtaaaaataggtaatatcttccattcttgttgtttacag |
36840738 |
T |
|
| Q |
306 |
caccgaacagggtgtttagtcggatgctatagaaaactgcaaaaatggtgcttgtcgtctgtttttgacgagtaccagcgctttgcagcagcaaaagctc |
405 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36840739 |
caccgaacaggctgtttagtcggatgctatagaaaactgcaaaaatggtgcttgtcgtctgtttttgacgagtaccagcgctttgcagcagcgaaagctc |
36840838 |
T |
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| Q |
406 |
gagtttcagatcagaggtttgtagag |
431 |
Q |
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| T |
36840839 |
gagtttcagatcagaggtttgtagag |
36840864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 694 - 652
Alignment:
| Q |
157 |
aatttgggctaatagggttctattagataggaacagatttgat |
199 |
Q |
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| T |
694 |
aatttgagccaatagggttccattagataggaacagatttgat |
652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 83841 - 83883
Alignment:
| Q |
157 |
aatttgggctaatagggttctattagataggaacagatttgat |
199 |
Q |
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| T |
83841 |
aatttgagccaatagggttccattagataggaacagatttgat |
83883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 18354453 - 18354411
Alignment:
| Q |
157 |
aatttgggctaatagggttctattagataggaacagatttgat |
199 |
Q |
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|||||| || |||||||||| |||||||||||||||||||||| |
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| T |
18354453 |
aatttgagccaatagggttccattagataggaacagatttgat |
18354411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 13231173 - 13231215
Alignment:
| Q |
157 |
aatttgggctaatagggttctattagataggaacagatttgat |
199 |
Q |
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|||||| || |||||||||| |||||||||||||||||||||| |
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| T |
13231173 |
aatttgagccaatagggttccattagataggaacagatttgat |
13231215 |
T |
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Back To:
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