View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_14 (Length: 447)
Name: NF16668_low_14
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 12695900 - 12696282
Alignment:
| Q |
18 |
agaaagtggtattcggtctatatctgcttgctcctcccatgagctatgggatcccttgcaacgttgatagcgtatttattttccaccaacaactcaattt |
117 |
Q |
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| T |
12695900 |
agaaagtggtattcggtctatatctgcttgctcctcccatgagctatgggatcccttgcaacgttgatagcgtatttattttccaccaacaactcaattt |
12695999 |
T |
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| Q |
118 |
gttctcctacacctatctgcatttcaagtagaagttattgtaaccataatccttatcat-----------aggcgatatgtattcaacttcacaagttga |
206 |
Q |
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| T |
12696000 |
gttctcctacacctatcttcatttcaagtagaagttattgtaaccataatccttatcatgttgcattgcaaggcgatatgtattcaacttcacaagttga |
12696099 |
T |
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| Q |
207 |
cagtggtacaactgtttgtttctttgaactccgggagaatggtgagttgaaaattttgaacatgtttcccattttgctccttctttcaacgttatctcca |
306 |
Q |
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| T |
12696100 |
cagtgctacaactgtttgtttctttgaactccgggagaatggtgagttgaaaattttgaacatgtttcccattttgctccttctttcaacgttatctcca |
12696199 |
T |
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| Q |
307 |
catgagtctgagtcacaatagcctgttatcttttttccttcatcatttatcttaggatataacacatcataatcataatgaag |
389 |
Q |
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| T |
12696200 |
catgagtctgagtcacaatagcctattatcttttttccttcatcatttatcttaggatataacacatcataatcataatgaag |
12696282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 271
Target Start/End: Original strand, 36072807 - 36072897
Alignment:
| Q |
181 |
gatatgtattcaacttcacaagttgacagtggtacaactgtttgtttctttgaactccgggagaatggtgagttgaaaattttgaacatgt |
271 |
Q |
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| T |
36072807 |
gatatgaattcaacttcacaagttgatagtgctacagttgtttgtttctttgaattcaaggatatcagtgagttgaaaattttgaacatgt |
36072897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 36072657 - 36072763
Alignment:
| Q |
42 |
tgcttgctcctcccatgagctatgggatcccttgcaacgttgatagcgtatttattttccaccaacaactcaatttgttctcctacacctatctgcattt |
141 |
Q |
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| T |
36072657 |
tgcttgctcctcctatgagctttgagattccttacaaggttgtcagcaaatttattgtccaccaatagcttaatttgctctcctacacttatcttcattt |
36072756 |
T |
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| Q |
142 |
caagtag |
148 |
Q |
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| T |
36072757 |
taagtag |
36072763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 292
Target Start/End: Original strand, 12447568 - 12447679
Alignment:
| Q |
181 |
gatatgtattcaacttcacaagttgacagtggtacaactgtttgtttctttgaactccgggagaatggtgagttgaaaattttgaacatgtttcccattt |
280 |
Q |
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||||||||| | |||||||||||||||||| || || ||| ||||||||||||||| |||| |||| ||||||||||| |||| |||| || |||| |
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| T |
12447568 |
gatatgtatatagcttcacaagttgacagtgctagaattgtatgtttctttgaactctatgagattggttagttgaaaattctgaaaatgtatctcattg |
12447667 |
T |
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| Q |
281 |
tgctccttcttt |
292 |
Q |
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| T |
12447668 |
tgctccctcttt |
12447679 |
T |
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