View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_16 (Length: 420)
Name: NF16668_low_16
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 40695757 - 40695346
Alignment:
| Q |
1 |
cattgaaaagatgcaccttttgttaaggagattggagatatgtagattgtgacaaagacattgagttgtaatatcaagatgaaagcaataattccctata |
100 |
Q |
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| T |
40695757 |
cattgaaaagatgcaccttttgttaaggagattggagatatgtagattgtgacaaagacattgagttgtaatatcaagatgaaagcaataattccctata |
40695658 |
T |
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| Q |
101 |
ttctttttctttaaaacaaattatttatgccaagtatgaaagctatatataggcaataacattggttacttactagtagtagttaccacgatacattgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40695657 |
ttctttttctttaaaacaaattatttatgccaagtatgaaagctatatataggcaataacattggttacttactagtagtagttactacgatacattgtc |
40695558 |
T |
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| Q |
201 |
ggtttaatttttattggatacaagttaaagtttgcagtttgcaaatgtcaattttcagccacatttgatgcatgtcgctttaaccatagaaaggttgaaa |
300 |
Q |
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| T |
40695557 |
ggtttaatttttattggatacaagttaaagtt-------tgcaaatgtcaattttcagccacatttgatgcatgtcgctttaaccatagaaaggttgaaa |
40695465 |
T |
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| Q |
301 |
atgatgcatgttttagtgtcaacatcatgcaattgcaaggtcgtcttgattgcaatatgattactagtacataactttttacaacttaatttcatgcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40695464 |
atgatgcatgttttagtgtcaacatcatgcaattgcaaggtcgtcttgattgcaatatgattactagtacat-actttttacaacttaatttcatgcttt |
40695366 |
T |
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| Q |
401 |
catgcagggcccaatcatta |
420 |
Q |
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| T |
40695365 |
catgccgggcccgatcatta |
40695346 |
T |
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