View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_17 (Length: 419)
Name: NF16668_low_17
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 124 - 403
Target Start/End: Complemental strand, 13399927 - 13399645
Alignment:
| Q |
124 |
gttgaaaattgcggaacagagtcctgcagacccatcaagtgattttaacnnnnnnn-gatatacatgacataagtatcagctaaccagctggcctcatat |
222 |
Q |
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| T |
13399927 |
gttgaaaattgcggaatagaggcctgcagacccatcaagtgattttaacaaaaaaaagatatacatgacataagtatcagctaaccagctggcctcatat |
13399828 |
T |
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| Q |
223 |
tctgtcttgctataactcatgttcatagtccgaatttgtacacttacagaaacaaactactttcctgttttagcaattataataaacgattatacccatc |
322 |
Q |
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| T |
13399827 |
tctgtcttgctataactcatgttcatagtccgaatttgtacacttacagaaacaaactactttcctactttagcaattataataaacgattatacccatc |
13399728 |
T |
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| Q |
323 |
aagcctcgcaggatacctttactaaatataggacatgattccagtgaaagaa--aaaacacccagaacgaatcatcatctaaa |
403 |
Q |
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| T |
13399727 |
aaacctcgcaggttacctttactaaatataggacatgattcaagtgaaagaaaaaaaacacccagaacgaatcagcatctaaa |
13399645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 13400037 - 13399991
Alignment:
| Q |
14 |
tactcaaataagttgacattgctttgaaccaataatcaatgtagact |
60 |
Q |
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| T |
13400037 |
tactcaaataagttgacattgctttgaaccaataatcaatgtagact |
13399991 |
T |
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