View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16668_low_18 (Length: 418)

Name: NF16668_low_18
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16668_low_18
NF16668_low_18
[»] chr8 (3 HSPs)
chr8 (203-416)||(3427967-3428180)
chr8 (55-204)||(3427795-3427944)
chr8 (19-58)||(3427010-3427049)
[»] chr5 (8 HSPs)
chr5 (205-347)||(9211459-9211606)
chr5 (205-347)||(9369879-9370026)
chr5 (166-201)||(19242401-19242436)
chr5 (159-201)||(9211389-9211431)
chr5 (168-201)||(12560227-12560260)
chr5 (167-199)||(12556985-12557017)
chr5 (205-249)||(12560154-12560198)
chr5 (205-249)||(19242464-19242508)
[»] chr3 (7 HSPs)
chr3 (166-201)||(20798780-20798815)
chr3 (159-201)||(9450789-9450831)
chr3 (159-201)||(17724638-17724680)
chr3 (159-201)||(19025867-19025909)
chr3 (159-201)||(26640805-26640847)
chr3 (159-201)||(28838401-28838443)
chr3 (169-201)||(28830446-28830478)
[»] chr7 (1 HSPs)
chr7 (159-201)||(19545424-19545466)
[»] chr1 (2 HSPs)
chr1 (159-201)||(1466862-1466904)
chr1 (159-201)||(35923325-35923367)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 203 - 416
Target Start/End: Original strand, 3427967 - 3428180
Alignment:
Q  203 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacaccttccaggtaagtatgttgcaatgtgtcacacacttctattttataac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  3427967 aggtgcaatggaggtcacacgcctagacgatgggccttcttgatcacaacacctgccaggtaagtatgctgcaatgtgtcacacacttctattttataac 3428066  T
Q  303 tcatgctccacattattcactacaaatcttccgatgtgggacttatattatgacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 402  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428067 tcatgctccacattattcactataaatcttccgatgtgggacttttattattacattctaaacaccattcaagtgtcagcagttcataccctagctcaca 3428166  T
Q  403 cctttgctactcca 416  Q
    | ||||| ||||||    
T  3428167 catttgccactcca 3428180  T

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Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 55 - 204
Target Start/End: Original strand, 3427795 - 3427944
Alignment:
Q  55 taagtagtagcttccatcggatatttacccaacctaatcagcccgcaaatttcaaccttcaacaattgcatcaaaaggagaagatgagcacagtatatta 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3427795 taagtagtagcttccatcggatatttacccaacctaatcagcccgcaaatttcaaccttcaacaattgcatcaaaaggagaagatgagcacaatatatta 3427894  T
Q  155 gcatgcccctactgcaacaaattatgatgtaagctccaccacttgggcag 204  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  3427895 gcatgcccctactgcaacaaattacgatgtaaactccaccacttgggcag 3427944  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 3427010 - 3427049
Alignment:
Q  19 aataccttcttcctattacactatattacagattagtaag 58  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  3427010 aataccttcttcctattacactatattacaaattagtaag 3427049  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 347
Target Start/End: Original strand, 9211459 - 9211606
Alignment:
Q  205 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 299  Q
    |||||||| |||||||  |||||| | |||||||||| |||||||      || || |||||||||||||||| |||||| ||||||| |||| ||||||    
T  9211459 gtgcaatgaaggtcacttgcctaggccatgggccttcctgatcacccattgaccccatccaggtaagtatgttacaatgtatcacacaattctgttttat 9211558  T
Q  300 aactcatgctccacattattcactacaaatcttccgatgtgggactta 347  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9211559 aactcatgctccataacattcactataaaacttccgatgtgggactta 9211606  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 347
Target Start/End: Complemental strand, 9370026 - 9369879
Alignment:
Q  205 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcaca-----acaccttccaggtaagtatgttgcaatgtgtcacacacttctattttat 299  Q
    |||||||| |||||||  |||||| | ||||||||| ||||||||      || || ||||||||||||||||||||||  ||||||| |||| ||||||    
T  9370026 gtgcaatgaaggtcacttgcctaggccatgggcctttttgatcacccattgaccccatccaggtaagtatgttgcaatgaatcacacaattctcttttat 9369927  T
Q  300 aactcatgctccacattattcactacaaatcttccgatgtgggactta 347  Q
    ||||||||||||| |  |||||||| ||| ||||||||||||||||||    
T  9369926 aactcatgctccataacattcactataaaacttccgatgtgggactta 9369879  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 19242401 - 19242436
Alignment:
Q  166 ctgcaacaaattatgatgtaagctccaccacttggg 201  Q
    |||||||||||||||||||| |||||||||||||||    
T  19242401 ctgcaacaaattatgatgtaggctccaccacttggg 19242436  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 9211389 - 9211431
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9211389 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9211431  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 12560260 - 12560227
Alignment:
Q  168 gcaacaaattatgatgtaagctccaccacttggg 201  Q
    |||||||||||||||||| |||||||||||||||    
T  12560260 gcaacaaattatgatgtaggctccaccacttggg 12560227  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 12557017 - 12556985
Alignment:
Q  167 tgcaacaaattatgatgtaagctccaccacttg 199  Q
    ||||||||||||||||||| |||||||||||||    
T  12557017 tgcaacaaattatgatgtaggctccaccacttg 12556985  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 12560198 - 12560154
Alignment:
Q  205 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac 249  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||    
T  12560198 gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac 12560154  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 19242464 - 19242508
Alignment:
Q  205 gtgcaatggaggtcacacgcctagacgatgggccttcttgatcac 249  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||    
T  19242464 gtgcaatggaggtcacttgcctaggccatgggccttcttgatcac 19242508  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 20798780 - 20798815
Alignment:
Q  166 ctgcaacaaattatgatgtaagctccaccacttggg 201  Q
    |||||||||||||||||||| |||||||||||||||    
T  20798780 ctgcaacaaattatgatgtaggctccaccacttggg 20798815  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 9450831 - 9450789
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  9450831 gcccccacagcaacaaattatgatgtaggctccaccacttggg 9450789  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 17724680 - 17724638
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  17724680 gcccccacagcaacaaattatgatgtaggctccaccacttggg 17724638  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 19025909 - 19025867
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19025909 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19025867  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 26640847 - 26640805
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| ||||||||||||||||||||| | |||||||||||||    
T  26640847 gcccccactgcaacaaattatgatgtaggttccaccacttggg 26640805  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 28838401 - 28838443
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  28838401 gcccccacagcaacaaattatgatgtaggctccaccacttggg 28838443  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 28830446 - 28830478
Alignment:
Q  169 caacaaattatgatgtaagctccaccacttggg 201  Q
    ||||||||||||||||| |||||||||||||||    
T  28830446 caacaaattatgatgtaggctccaccacttggg 28830478  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Original strand, 19545424 - 19545466
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  19545424 gcccccacagcaacaaattatgatgtaggctccaccacttggg 19545466  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 1466904 - 1466862
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  1466904 gcccccacagcaacaaattatgatgtaggctccaccacttggg 1466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 35923367 - 35923325
Alignment:
Q  159 gcccctactgcaacaaattatgatgtaagctccaccacttggg 201  Q
    ||||| || |||||||||||||||||| |||||||||||||||    
T  35923367 gcccccacagcaacaaattatgatgtaggctccaccacttggg 35923325  T

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