View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_2 (Length: 625)
Name: NF16668_low_2
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Complemental strand, 26473064 - 26472447
Alignment:
| Q |
1 |
agaccattgttggtataattgcatccaacaatccgcctgattcttcttgtgaatcttacttttaagaatttgaaccaagcattcgcctttaatcctccca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26473064 |
agaccattgttggtataattgcatccaacaatccgcctgattcttcttctgaatcttacttttaagaatttgaaccaagcattcgcctttaatcctccca |
26472965 |
T |
|
| Q |
101 |
tgtaaagttatgtaattagcctctatggttaacaaagctctaatatctcttatagcactatcataatcatctaatgcaatatacaaccaagccctcaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |
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|
| T |
26472964 |
tgtaaagttatgtaattagcctctatggttaacaaagctctaatatctcttatagcactatcatagtcatctaatgcaatatacagccatgccctcaact |
26472865 |
T |
|
| Q |
201 |
ctaaacaatccggtgaaaacttaaatcctagaaacttatctaactccataatcccttcctttatttgcttctcctcgactttctccaatgctctatattt |
300 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26472864 |
ctaaacaatcaggtgaaagcttaaatcctagaaacttatctaactccataatcccttcctttatttgcttctcctcgactttttccaatgctctatattt |
26472765 |
T |
|
| Q |
301 |
atacggaaatgaaagtgaaggatcgagttgagttacaaaatccaaatcaaaacctttttctcttcccatattgtacaatgctctctcttgatacatccaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26472764 |
atacggaaatgaaagtgaaggatcgagttgagttgcaaaatccaaatcaaaacctttttctcttcccatattgtacaatgctctctcttgatacatccaa |
26472665 |
T |
|
| Q |
401 |
ccaactggtttatactcgaatatgagtgaactaattaacttataagctgaatatggttgaccttgtttatgcttcgttctagccacacctgctatagaat |
500 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26472664 |
ccgactggtttatactcgaatatgagtgaactaattaacttataagctgaatatggttgaccttgtttatgcttcgttctagccacacctgctatagaat |
26472565 |
T |
|
| Q |
501 |
aaacatggcctaattcaactgcttcatcgaaacaaggttgagcttctttatactctcttctctcaagatacacacaccctaattgatgcaatgcaagacc |
600 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| || ||| |||||||||||||| |||||||||| ||||| |
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|
| T |
26472564 |
aaacatgacctaattcaactgcttcatcgaaacaatgttgagcttctttatactcccttctttccagaaacacacaccctaatcgatgcaatgctagacc |
26472465 |
T |
|
| Q |
601 |
cttctgccatctctctgc |
618 |
Q |
| |
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|||||||||| ||||||| |
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| T |
26472464 |
cttctgccatttctctgc |
26472447 |
T |
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