View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16668_low_20 (Length: 411)
Name: NF16668_low_20
Description: NF16668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16668_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 4313926 - 4314305
Alignment:
| Q |
16 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctg |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4313926 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttccgagttcttctactctg |
4314025 |
T |
|
| Q |
116 |
taatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4314026 |
taatagaattctccaccaagcaatgtggccaaatcatgcaccaggtcatgcataacaaaactcttgttctcacttcctgaacattgaaaaaatgaccttg |
4314125 |
T |
|
| Q |
216 |
aaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaatt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4314126 |
aaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagatcttcggccatccataacaagatcaaatt |
4314225 |
T |
|
| Q |
316 |
gtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgat |
395 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4314226 |
gtctttacgaaatgtgtaatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagagagataatgat |
4314305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 4254565 - 4254183
Alignment:
| Q |
11 |
cgaagaatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttcta |
110 |
Q |
| |
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|||| ||||||| || || |||||||||||||| ||||| ||||||||||||| ||||| || |||||||| || ||||| || | || |||| | |
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| T |
4254565 |
cgaaaaatatcaaagctttccaagattggatcactgaactcactaaatgataaatgacgagtgttagtaccaatcttagtttctttcccaagctcttatg |
4254466 |
T |
|
| Q |
111 |
ctctgtaatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatga |
210 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| || ||||||||||| || |||||||| |||| ||||||| | || |||| |||||||||||| |
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| T |
4254465 |
ttctgaaatagaattctccatcaagaaatgttgctaaatcatgcaccagatcatgcatcacaaaactctggttctcattcccggaacgttgaaaaaatga |
4254366 |
T |
|
| Q |
211 |
ccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatc |
310 |
Q |
| |
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|| ||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||| | || |||||||| |||| || ||||| ||||||||| |
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| T |
4254365 |
tctagaagctaagtcattaaaatacccataaccaacttcttctaaagtattcccattttttgaaggtcttaaaagatcttcagctatccacaacaagatc |
4254266 |
T |
|
| Q |
311 |
aaattgtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatg |
393 |
Q |
| |
|
|||| ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
4254265 |
aaatcatctctatcaaattcgtaatctttaggatacaaggaacaataaacaaagcaacgtttcaaacagggagggagataatg |
4254183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 194 - 378
Target Start/End: Complemental strand, 4247263 - 4247079
Alignment:
| Q |
194 |
gaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcgg |
293 |
Q |
| |
|
|||| |||||||||||| | |||||||| |||||||||| |||||||||||| ||||||||||||| ||| |||| |||| || ||||||| |||| | |
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| T |
4247263 |
gaacgttgaaaaaatgatatggaaactaaatcattaaaatgatcattaccaactgcttctaaagtcttaccagtttttggaggctgtaaaagatcttctg |
4247164 |
T |
|
| Q |
294 |
ccatccataacaagatcaaattgtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaata |
378 |
Q |
| |
|
||||||| |||||||||| | ||| | |||| || ||| |||||| |||| ||||| ||||||||||||||||||||||| |
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|
| T |
4247163 |
ccatccacaacaagatcagttcctctctgtaaaattcatgatccttaggaaacaatgaacagtaaacaaagcagcgtttcaaata |
4247079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 4305405 - 4305441
Alignment:
| Q |
357 |
aaacaaagcagcgtttcaaatagggagggagataatg |
393 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||| |
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|
| T |
4305405 |
aaacaaagcaacatttcaaatagggagggagataatg |
4305441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 41934003 - 41933624
Alignment:
| Q |
16 |
aatatcatagtttcccaagattggatcaatgaacgtggtaaatgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctg |
115 |
Q |
| |
|
||||||| ||||| || ||||||||||| |||| ||| ||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| |||| |
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| T |
41934003 |
aatatcaaagttttccgagattggatcagtgaatgtgctaaatgataaatgacgagtcttggtactaatctttgtttcatttccaagttcttctgttctg |
41933904 |
T |
|
| Q |
116 |
taatagaattctccaccaagcaatgtggccaaatcatgcactaggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttg |
215 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||| || ||||||||| |||| |||||||||||||||||||||| |
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| T |
41933903 |
taatagaattccccaccgagcaacgtggctaaatcgtgcactagatcatgcatcacaaaacttttgttctcatttccagaacattgaaaaaatgaccttg |
41933804 |
T |
|
| Q |
216 |
aaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaatt |
315 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || | || || |||||||||||||||||||||||||||||||||||| |
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| T |
41933803 |
aagctaagtcattaaaatattcattaccaacttcttctaaagtcatcccacttcttttaggctgtaaaagaccttcggccatccataacaagatcaaatt |
41933704 |
T |
|
| Q |
316 |
gtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgat |
395 |
Q |
| |
|
||||||| ||||| |||||| |||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||| |
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|
| T |
41933703 |
gtctttatgaaattcataatccttaggatataaggaacaataaacaaagcaacgtttcaaataaggaaggagataatgat |
41933624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 57 - 395
Target Start/End: Original strand, 34802043 - 34802381
Alignment:
| Q |
57 |
atgataaatgtcgagtcttggtaccaatatttgtttcatttctgagttcttctactctgtaatagaattctccaccaagcaatgtggccaaatcatgcac |
156 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||| || | |||||||| ||| ||||||| |||||||| | ||| || || ||||||||||| |
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|
| T |
34802043 |
atgataagtgacgagtcttggtaccaatctttgtttctttccctagttcttccgttctaaaatagaactctccacctatcaacgttgctaaatcatgcac |
34802142 |
T |
|
| Q |
157 |
taggtcatgcatnnnnnnnctcttgttctcacttcctgaacattgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaa |
256 |
Q |
| |
|
||| |||||||| |||| ||| |||| || |||| ||||||||||| |||||| |||||||||||||||| ||| || ||||||||||||| |
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|
| T |
34802143 |
tagatcatgcatcacaaaactctcattcccactcccagaacgatgaaaaaatgatcttgaagctaagtcattaaaatacccataactaacttcttctaaa |
34802242 |
T |
|
| Q |
257 |
gtcttcccatttttaggagactttaaaagaccttcggccatccataacaagatcaaattgtctttacgaaatgtataatctttaggatacaaggaacaat |
356 |
Q |
| |
|
||||||||| ||| |||| || ||||||| |||| |||||||||||||||||||||| ||||||| ||| |||||| |||||||||| ||| ||| |
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|
| T |
34802243 |
gtcttcccaatttccggaggctgtaaaagatcttcagccatccataacaagatcaaatcgtctttatcgaattcataatccttaggatacagtgaataat |
34802342 |
T |
|
| Q |
357 |
aaacaaagcagcgtttcaaatagggagggagataatgat |
395 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
34802343 |
aaacaaagcatcccttcaagcagggagggagataatgat |
34802381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 395
Target Start/End: Original strand, 6059532 - 6059728
Alignment:
| Q |
199 |
ttgaaaaaatgaccttgaaactaagtcattaaaatattcattaccaacttcttctaaagtcttcccatttttaggagactttaaaagaccttcggccatc |
298 |
Q |
| |
|
|||||||||||| || |||||||| | || |||||| ||| |||||| ||||| |||||| | || ||| | || | | ||||||| ||||||||||| |
|
|
| T |
6059532 |
ttgaaaaaatgatctcgaaactaaataatcaaaatactcagaaccaacctcttcaaaagtcattccttttattggtggcaataaaagatcttcggccatc |
6059631 |
T |
|
| Q |
299 |
cataacaagatcaaattgtctttacgaaatgtataatctttaggatacaaggaacaataaacaaagcagcgtttcaaatagggagggagataatgat |
395 |
Q |
| |
|
|| |||||||| |||| | ||| |||| ||||||||| ||||| | |||||||||||||| ||||||||||||| ||||||||||| |||| |
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|
| T |
6059632 |
cacaacaagattaaatcatttttctcaaattcataatctttgggatatagcgaacaataaacaaaacagcgtttcaaatgtggagggagatagtgat |
6059728 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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